Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40298
         (724 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34510| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_15464| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_16381| Best HMM Match : DUF1222 (HMM E-Value=9.6e-06)               28   8.8  

>SB_34510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1845

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +2

Query: 503 RVVVSSGHDKRVLMSCRLREVAHECRL 583
           RV+V SG  ++VL   R RE  HEC L
Sbjct: 117 RVLVMSGKKRQVLDGDRGRECVHECSL 143


>SB_15464| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1042

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 112 VPYRLLDGECHTCSWTSALLLLFIYMLTII 23
           VP++L++ +  T  W S  L LFIY++ ++
Sbjct: 637 VPFKLMNLKWQTFGWLSLWLNLFIYLMYLM 666


>SB_16381| Best HMM Match : DUF1222 (HMM E-Value=9.6e-06)
          Length = 156

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 371 LFFSWIVYKSVFVNFFKLLFINGCFSIL 288
           +FF  ++  +   NFF LL +  CFSIL
Sbjct: 51  IFFQLLIILTGNYNFFNLLAVLACFSIL 78


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,779,860
Number of Sequences: 59808
Number of extensions: 373722
Number of successful extensions: 955
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)