Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40298
         (724 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X17551-2|CAA35587.1|  888|Drosophila melanogaster protein ( D.me...    48   1e-05
AY047531-1|AAK77263.1|  888|Drosophila melanogaster GH03753p pro...    48   1e-05
AF237761-2|AAF81411.1|  908|Drosophila melanogaster unknown prot...    42   6e-04
BT021240-1|AAX33388.1|  827|Drosophila melanogaster RE74651p pro...    37   0.032
AF173374-1|AAD52607.1|  377|Drosophila melanogaster unknown prot...    37   0.032
AE014298-2107|AAN09655.2|  827|Drosophila melanogaster CG33968-P...    37   0.032
M22874-2|AAA28675.1|  916|Drosophila melanogaster protein ( D.me...    34   0.17 
AY089343-1|AAL90081.2|  718|Drosophila melanogaster AT16518p pro...    34   0.17 
AY060438-1|AAL25477.1|  906|Drosophila melanogaster LD46618p pro...    31   1.6  
M17214-2|AAA28508.1|  858|Drosophila melanogaster protein ( D.me...    30   2.8  
AE014296-2950|AAF49312.2| 1660|Drosophila melanogaster CG6052-PA...    29   4.8  

>X17551-2|CAA35587.1|  888|Drosophila melanogaster protein (
           D.melanogaster white-one mutant DNA with Doc retroposon,
           inserted inwhite locuspromoter region.  ).
          Length = 888

 Score = 48.0 bits (109), Expect = 1e-05
 Identities = 21/51 (41%), Positives = 30/51 (58%)
 Frame = -1

Query: 682 QSRFCRIAVGAPWFLRNVDLHDDLELDPVSKYLQSAFVRHFAKTARHENPL 530
           QSR  RI  GAPW+LRN ++H DL++  V + +     ++  K   H NPL
Sbjct: 816 QSRILRIITGAPWYLRNENIHRDLKIKLVIEVIAEKKTKYNEKLTTHTNPL 866


>AY047531-1|AAK77263.1|  888|Drosophila melanogaster GH03753p
           protein.
          Length = 888

 Score = 48.0 bits (109), Expect = 1e-05
 Identities = 21/51 (41%), Positives = 30/51 (58%)
 Frame = -1

Query: 682 QSRFCRIAVGAPWFLRNVDLHDDLELDPVSKYLQSAFVRHFAKTARHENPL 530
           QSR  RI  GAPW+LRN ++H DL++  V + +     ++  K   H NPL
Sbjct: 816 QSRILRIITGAPWYLRNENIHRDLKIKLVIEVIAEKKTKYNEKLTTHTNPL 866


>AF237761-2|AAF81411.1|  908|Drosophila melanogaster unknown protein.
          Length = 908

 Score = 42.3 bits (95), Expect = 6e-04
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = -1

Query: 685  VQSRFCRIAVGAPWFLRNVDLHDDLELDPVSKYLQSAFVRHFAKTARHENPLVVAAGNYY 506
            +Q++  R+  G  WF+RN  LH DL+L  V   +     R+  +  RH N L  A     
Sbjct: 824  IQNKVARLITGCEWFVRNTTLHRDLKLATVFDEINKHSSRYHDRLERHRNRLASALNRSR 883

Query: 505  P 503
            P
Sbjct: 884  P 884


>BT021240-1|AAX33388.1|  827|Drosophila melanogaster RE74651p
           protein.
          Length = 827

 Score = 36.7 bits (81), Expect = 0.032
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
 Frame = -3

Query: 371 LFFSWIVYKS--VFVNFFKLLFINGCFSILSLLEKYSYLVFDSSFPVY*IFRCLSNRYRH 198
           LFFSWIV+ S   + N    LF    F + +   K SY ++ + FPV+  F     R+ H
Sbjct: 686 LFFSWIVFVSHNGYTNKLTKLFAWRGFQVST---KLSYAIYLTQFPVF-FFNVGRRRHIH 741

Query: 197 HYFS 186
           HY++
Sbjct: 742 HYYN 745


>AF173374-1|AAD52607.1|  377|Drosophila melanogaster unknown
           protein.
          Length = 377

 Score = 36.7 bits (81), Expect = 0.032
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
 Frame = -3

Query: 371 LFFSWIVYKS--VFVNFFKLLFINGCFSILSLLEKYSYLVFDSSFPVY*IFRCLSNRYRH 198
           LFFSWIV+ S   + N    LF    F + +   K SY ++ + FPV+  F     R+ H
Sbjct: 236 LFFSWIVFVSHNGYTNKLTKLFAWRGFQVST---KLSYAIYLTQFPVF-FFNVGRRRHIH 291

Query: 197 HYFS 186
           HY++
Sbjct: 292 HYYN 295


>AE014298-2107|AAN09655.2|  827|Drosophila melanogaster CG33968-PA
           protein.
          Length = 827

 Score = 36.7 bits (81), Expect = 0.032
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
 Frame = -3

Query: 371 LFFSWIVYKS--VFVNFFKLLFINGCFSILSLLEKYSYLVFDSSFPVY*IFRCLSNRYRH 198
           LFFSWIV+ S   + N    LF    F + +   K SY ++ + FPV+  F     R+ H
Sbjct: 686 LFFSWIVFVSHNGYTNKLTKLFAWRGFQVST---KLSYAIYLTQFPVF-FFNVGRRRHIH 741

Query: 197 HYFS 186
           HY++
Sbjct: 742 HYYN 745


>M22874-2|AAA28675.1|  916|Drosophila melanogaster protein (
           D.melanogaster LINEelement J-1, clone J-1. ).
          Length = 916

 Score = 34.3 bits (75), Expect = 0.17
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = -1

Query: 685 VQSRFCRIAVGAPWFLRNVDLHDDLELDPVSKYLQSAFVRHFAKTARHENPLVVAAG 515
           +Q++  R   GAPW++R  D+  DL++  +   LQ+   ++  +   H N L    G
Sbjct: 829 LQAKTLRRISGAPWYMRTRDIERDLKVPKLGDKLQNIAQKYMERLNVHPNSLARKLG 885


>AY089343-1|AAL90081.2|  718|Drosophila melanogaster AT16518p
           protein.
          Length = 718

 Score = 34.3 bits (75), Expect = 0.17
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = -1

Query: 685 VQSRFCRIAVGAPWFLRNVDLHDDLELDPVSKYLQSAFVRHFAKTARHENPLVVAAG 515
           +Q++  R   GAPW++R  D+  DL++  +   LQ+   ++  +   H N L    G
Sbjct: 631 LQAKTLRRISGAPWYMRTRDIERDLKVPKLGDKLQNIAQKYLERLNVHPNSLARKLG 687


>AY060438-1|AAL25477.1|  906|Drosophila melanogaster LD46618p
           protein.
          Length = 906

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -1

Query: 685 VQSRFCRIAVGAPWFLRNVDLHDDLELDPVSKYLQSAFVRHFAKTARHENPL 530
           +Q+R  R     P+++R   LH DL L  V + +     R+  +  RH + L
Sbjct: 830 LQNRAMRAITDCPYYVRGTTLHRDLNLHTVEEQISRHTSRYSDRLRRHHSIL 881


>M17214-2|AAA28508.1|  858|Drosophila melanogaster protein (
           D.melanogaster Fw repetitiveelement putative reverse
           transcriptase, complete cds,and putative binding
           protein, 3' end. ).
          Length = 858

 Score = 30.3 bits (65), Expect = 2.8
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 682 QSRFCRIAVGAPWFLRNVDLHDDLELDPVS 593
           QS+  R   GAPW++R+ ++  DL +  V+
Sbjct: 818 QSKILRTITGAPWYVRSENIQRDLNIPSVT 847


>AE014296-2950|AAF49312.2| 1660|Drosophila melanogaster CG6052-PA
           protein.
          Length = 1660

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 73  SWTSALLLLFIYMLTIIC*CFFL 5
           SW   LL L  Y++T +C CF L
Sbjct: 289 SWVPVLLFLHTYVVTSVCLCFML 311


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,270,379
Number of Sequences: 53049
Number of extensions: 545346
Number of successful extensions: 1361
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1360
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3231892257
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)