Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40298
         (724 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81510-4|CAB04164.1|  839|Caenorhabditis elegans Hypothetical pr...    31   0.63 
U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu...    29   2.5  
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.      29   2.5  
Z99710-3|CAB16864.1|  679|Caenorhabditis elegans Hypothetical pr...    28   7.8  
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p...    28   7.8  
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr...    28   7.8  

>Z81510-4|CAB04164.1|  839|Caenorhabditis elegans Hypothetical
           protein F21D9.5 protein.
          Length = 839

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -3

Query: 374 FLFFSWIVYKSVFVNFFKLLFINGCFSI-LSLLEKYSY 264
           F+  SW +      N F  L+  GC +I L LLE YSY
Sbjct: 413 FIEISWTIISEKDTNLFLKLWFKGCANINLKLLEIYSY 450


>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
           guidance protein 2,isoform a protein.
          Length = 2886

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 23/71 (32%), Positives = 35/71 (49%)
 Frame = -2

Query: 624 STMTWSSTPSVSIYSRHSCATSRRRHDMRTLLSWPLETTTRSCRSNGKPSTSPKARHHGS 445
           S ++ SS+P     S  S   S   H + T ++  L TTT    S G PSTS      G+
Sbjct: 732 SILSNSSSPHQPTPSLCSLPESSSLHSIPTAMT-SLSTTTTPTHSQGAPSTSTPIGGSGN 790

Query: 444 S*SINVAFRLE 412
           S +++V  ++E
Sbjct: 791 S-TLSVLHQME 800


>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
          Length = 2914

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 23/71 (32%), Positives = 35/71 (49%)
 Frame = -2

Query: 624 STMTWSSTPSVSIYSRHSCATSRRRHDMRTLLSWPLETTTRSCRSNGKPSTSPKARHHGS 445
           S ++ SS+P     S  S   S   H + T ++  L TTT    S G PSTS      G+
Sbjct: 732 SILSNSSSPHQPTPSLCSLPESSSLHSIPTAMT-SLSTTTTPTHSQGAPSTSTPIGGSGN 790

Query: 444 S*SINVAFRLE 412
           S +++V  ++E
Sbjct: 791 S-TLSVLHQME 800


>Z99710-3|CAB16864.1|  679|Caenorhabditis elegans Hypothetical
           protein F08A8.2 protein.
          Length = 679

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 212 NRYRHHYFSAQLKAPMTHMAIKGL 141
           N Y  H+F  QL+   TH+ +KG+
Sbjct: 209 NNYGPHFFMVQLRDEKTHIPLKGV 232


>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
            protein 44, isoform f protein.
          Length = 6994

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 622  HDDLELDPVSKYLQSAFVRHFAKTARHENPLVVAAGNY 509
            H D E +  ++ + S F RH  +    E+P +V +G Y
Sbjct: 5374 HSDEEDENDAEVIDSEFYRHSQEQNNEEDPSIVESGEY 5411


>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
            protein.
          Length = 6994

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 622  HDDLELDPVSKYLQSAFVRHFAKTARHENPLVVAAGNY 509
            H D E +  ++ + S F RH  +    E+P +V +G Y
Sbjct: 5374 HSDEEDENDAEVIDSEFYRHSQEQNNEEDPSIVESGEY 5411


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,665,137
Number of Sequences: 27780
Number of extensions: 282207
Number of successful extensions: 733
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)