Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40298
         (724 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26690.1 68417.m03846 glycerophosphoryl diester phosphodieste...    28   5.5  
At1g76690.1 68414.m08924 12-oxophytodienoate reductase (OPR2) id...    28   7.2  

>At4g26690.1 68417.m03846 glycerophosphoryl diester
           phosphodiesterase family protein weak similarity to
           glycerophosphodiester phosphodiesterase [Borrelia
           hermsii] GI:1399038; contains Pfam profile PF03009:
           Glycerophosphoryl diester phosphodiesterase family
          Length = 759

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -1

Query: 721 NQYFFNPMTAMWVQSRFCRIAVGAPWFLRNVDLHDDLELDPVSKYL 584
           +Q +  P T++   +    + V    F  ++D+  D   DPVS+YL
Sbjct: 274 DQQYLLPHTSLVQDAHKAGLEVFVSGFANDIDIAHDYSFDPVSEYL 319


>At1g76690.1 68414.m08924 12-oxophytodienoate reductase (OPR2)
           identical to 12-oxophytodienoate reductase OPR2
           GB:AAC78441 [Arabidopsis thaliana]
          Length = 374

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 646 WFLRNVDLHDDLELD-PVSKYLQSAF 572
           WFL N DL    +LD P++KY +S F
Sbjct: 330 WFLANPDLPKRFQLDAPLNKYNRSTF 355


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,682,871
Number of Sequences: 28952
Number of extensions: 255167
Number of successful extensions: 595
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)