Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40297
         (610 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   3.5  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   3.5  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    22   4.6  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   6.1  
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    21   8.1  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = -1

Query: 388 STESALVPVGSLGSVSTI--PKMSIDLSPFSTSSAKRGMSWSTPYLLHS 248
           S   ++   G+L  +S++  P   +  SP STS A   +S ++PY+L S
Sbjct: 676 SLNQSISSPGALSGLSSLTSPGGMVLPSP-STSVASPSVSVASPYMLQS 723



 Score = 22.2 bits (45), Expect = 3.5
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = +3

Query: 351 PKDPTGTSADSVDNPV 398
           P++P GT+   ++NP+
Sbjct: 746 PRNPVGTNPHDINNPL 761


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = -1

Query: 388 STESALVPVGSLGSVSTI--PKMSIDLSPFSTSSAKRGMSWSTPYLLHS 248
           S   ++   G+L  +S++  P   +  SP STS A   +S ++PY+L S
Sbjct: 568 SLNQSISSPGALSGLSSLTSPGGMVLPSP-STSVASPSVSVASPYMLQS 615



 Score = 22.2 bits (45), Expect = 3.5
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = +3

Query: 351 PKDPTGTSADSVDNPV 398
           P++P GT+   ++NP+
Sbjct: 638 PRNPVGTNPHDINNPL 653


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 468 PYTSHGHCGLLKSGEV 515
           P+  HGH  L+  GEV
Sbjct: 495 PWVQHGHQELVLGGEV 510


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = -3

Query: 599 LKEPPHEHQLLHKPMRLQLSSLPMLHGRYLPTLQ 498
           L   P  H L  +P     S+ P    R LPT +
Sbjct: 347 LHHNPMSHHLKQEPSGFTSSNHPFSINRLLPTAE 380


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -2

Query: 258 CYIRHTMNRFDSIIFFY*KHRIHNIVRFDACV 163
           CY    +N   S IF       HN++R   CV
Sbjct: 117 CYHLQKINVQQSGIFINLPFLEHNLIRLKNCV 148


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,015
Number of Sequences: 336
Number of extensions: 3637
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15457268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)