Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40297
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar...   105   4e-24
SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom...    29   0.53 
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    28   1.2  
SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   2.1  
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c...    27   2.8  
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    27   2.8  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   2.8  
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi...    27   2.8  
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    25   8.7  
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||...    25   8.7  
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe...    25   8.7  

>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score =  105 bits (253), Expect = 4e-24
 Identities = 47/91 (51%), Positives = 69/91 (75%), Gaps = 1/91 (1%)
 Frame = +3

Query: 258 RYGVDQLIPLLAELVEKGLKSILIFGIVETLPKDPTGTSADSVDNPVIKALPKLRAAFPD 437
           R+GV++L   L  LV+KGL+S+++FG++E+  KD  G+ ADS + PVIKA+ ++R  FP+
Sbjct: 56  RWGVNRLEEFLGPLVKKGLRSVILFGVIES-KKDYCGSMADSENGPVIKAVKEIRHLFPE 114

Query: 438 LLIACDVCLCPYTSHGHCGLL-KSGEVSTMK 527
           L++ACDVCLC YT HGHCGLL + G ++  K
Sbjct: 115 LVVACDVCLCEYTDHGHCGLLYEDGTINNAK 145



 Score = 41.5 bits (93), Expect = 9e-05
 Identities = 21/39 (53%), Positives = 28/39 (71%)
 Frame = +2

Query: 494 LTEEWGGIDHEASVKRIAEVALAYAKAGAHVVAPSDMMD 610
           L  E G I++  SV+RIAEV+  YA AGA +++PSD MD
Sbjct: 134 LLYEDGTINNAKSVERIAEVSGNYALAGAQIISPSDCMD 172



 Score = 37.5 bits (83), Expect = 0.002
 Identities = 19/47 (40%), Positives = 28/47 (59%)
 Frame = +1

Query: 112 VLQGGYHHAALRKLQEPNTSIEPHNIMYPVFLIEKDNAIEPVHSMPN 252
           +L  GY +  LR+ Q     I   ++MYP+F+ E D+A E + SMPN
Sbjct: 8   LLHAGYSNPLLREWQGVRP-ITKSSLMYPIFISEIDDAKEAIDSMPN 53


>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 233

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = +1

Query: 70  ETKIMSNLYLTPEHVLQGGYHHAA-LRKLQEPNTSIEPHNIMYPVFLIEKD-NAIEPVHS 243
           + +I  +  L   H  Q   H AA +RKL E N++IE    + P+F  E D + ++ V S
Sbjct: 50  QLRIQKHAKLNYSH--QATQHVAAQIRKLYEQNSAIEDITFLNPLFYGEIDLSNLDSVKS 107

Query: 244 MPN 252
           +P+
Sbjct: 108 LPH 110


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 19/50 (38%), Positives = 25/50 (50%)
 Frame = -1

Query: 397 TGLSTESALVPVGSLGSVSTIPKMSIDLSPFSTSSAKRGMSWSTPYLLHS 248
           + LST S  +P  +  SVS     S+ +S    SS+    S STP L HS
Sbjct: 535 SSLSTPSTTIPTSN-SSVSLQTSSSLIISSPIISSSLTATSTSTPALTHS 583


>SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 152 YRNRTQASNRTILCILCF 205
           Y NR QASN T +C+ C+
Sbjct: 160 YSNRLQASNDTGVCVKCY 177


>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 559

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = -3

Query: 263 ISVTFGIL*TGSIALSFSIKNTGYIILCGSMLVFGSCNFLKAA*WYPPCSTCSG 102
           IS  F ++    +   F IK+    I C +ML+F  CN      W  P +T SG
Sbjct: 208 ISFPFHLIRPEYLQRFFLIKSISTYIACFAMLIFLLCNVGSHVVWDQP-ATVSG 260


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -3

Query: 599 LKEPPHEHQLLHKPMRLQLSSLP 531
           LK+   EHQ LHK M + LSS P
Sbjct: 878 LKKTNDEHQNLHKEMLVVLSSQP 900


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = -1

Query: 397 TGLSTESALVPVGSLGSVSTIPKMSIDLSPFSTSSAKRGMSWSTPYLLHSAY 242
           +GL T SA  P   L + +  P  +   S F+T+S     S STP    SAY
Sbjct: 691 SGLPTSSASTP---LSNSTVAPTSTFTSSGFNTTSGLPTSSVSTPLSNSSAY 739


>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
           Tea4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
 Frame = +1

Query: 46  NTYSHLIKETKIMSNLYLTPEHVLQGGYHHAALRKLQEPNTSIEPHNI-MYPVFLIEKD- 219
           N+Y  L+K  K ++  YL  E++       A L K +   TS    ++ + P+ ++EK  
Sbjct: 152 NSYWWLVKMCKNLAIGYLPAEYIETPSERLARLNKYKNSETSNSQQSVTLPPLDIVEKTL 211

Query: 220 NAIEPVHSMPNVTDMVLTNS 279
            A  P   +  VT    +NS
Sbjct: 212 EAPSPNFRIKRVTFTCSSNS 231


>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 339 VETLPKDPTGTSADSVDNPVIKALPK 416
           +E    +P G SA +VDN  I +LP+
Sbjct: 501 MEIATSEPNGNSASTVDNLSICSLPE 526


>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 492 HNVRVMCKDINIHHMLLTNQERQHAISAM 406
           HN R   +D  +H  +   Q   HAISAM
Sbjct: 196 HNPRSTIQDPRVHACIFFIQPTGHAISAM 224


>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -1

Query: 322 IDLSPF-STSSAKRGMSWSTPYLLH 251
           +DL  F S SSA+  + WS PY  H
Sbjct: 238 VDLFIFLSPSSARHCLCWSLPYFQH 262


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,702,402
Number of Sequences: 5004
Number of extensions: 58846
Number of successful extensions: 143
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)