Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40297
         (610 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1311 - 29241884-29242054,29242802-29242879,29242968-292430...    44   1e-04
01_06_1810 - 40049677-40049951,40050032-40050112,40050201-400503...    31   0.71 
11_02_0103 - 8320207-8320443,8320540-8320593,8321055-8321162,832...    28   5.0  
05_05_0381 + 24531622-24532918,24535334-24535468,24535592-245357...    28   6.7  

>06_03_1311 -
           29241884-29242054,29242802-29242879,29242968-29243049,
           29243141-29243212,29243316-29243437,29243541-29243596,
           29244264-29244333,29244435-29244518,29244599-29244667,
           29244855-29244928,29245014-29245125,29245220-29245510
          Length = 426

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 22/69 (31%), Positives = 38/69 (55%)
 Frame = +3

Query: 309 GLKSILIFGIVETLPKDPTGTSADSVDNPVIKALPKLRAAFPDLLIACDVCLCPYTSHGH 488
           G+ S ++F  V    K  +G  A + +  V + +  L+  FPD+++  DV L PY+S GH
Sbjct: 167 GVNSFVLFPKVPDALKSQSGDEAYNDNGLVPRTIRLLKDKFPDIVVYTDVALDPYSSDGH 226

Query: 489 CGLLKSGEV 515
            G+++   V
Sbjct: 227 DGIVREDGV 235



 Score = 36.3 bits (80), Expect = 0.019
 Identities = 17/39 (43%), Positives = 28/39 (71%)
 Frame = +2

Query: 494 LTEEWGGIDHEASVKRIAEVALAYAKAGAHVVAPSDMMD 610
           +  E G I ++ +V ++ + A++ A+AGA VV+PSDMMD
Sbjct: 229 IVREDGVIMNDETVYQLCKQAVSQARAGADVVSPSDMMD 267


>01_06_1810 -
           40049677-40049951,40050032-40050112,40050201-40050371,
           40050434-40050497,40050689-40050777,40051244-40051378,
           40051464-40051515
          Length = 288

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 568 CISQCDFSYPLYRCFMVDTSPLFSKPQCP 482
           C+  CD +  L   ++VD SP  S+PQCP
Sbjct: 121 CLLNCDGTEELPEEWLVDCSPQESEPQCP 149


>11_02_0103 -
           8320207-8320443,8320540-8320593,8321055-8321162,
           8321406-8321551,8321697-8321892,8323312-8323533
          Length = 320

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -1

Query: 397 TGLSTESALVPVGSLGSVSTIPKMSIDLSPFSTSSAKRGMSWSTPY 260
           +GL  + ALV +G       +P+ +I L+P S S  +RG+    PY
Sbjct: 83  SGLQDQVALVSIGGWSPNQGVPQPAIILNP-SFSRHRRGLCPGRPY 127


>05_05_0381 +
           24531622-24532918,24535334-24535468,24535592-24535764,
           24536029-24536239,24536287-24536554,24536664-24536814,
           24536938-24537246
          Length = 847

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +1

Query: 10  NFLFKFVKSRN*NTYSHLIKETKIMSNLYL 99
           NF F FV S    TYS  + +  IMS L L
Sbjct: 233 NFSFSFVNSAREVTYSFQVPDASIMSRLVL 262


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,935,363
Number of Sequences: 37544
Number of extensions: 356380
Number of successful extensions: 920
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)