Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40297
(610 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36681| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.73
SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 30 1.3
SB_18867| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_33807| Best HMM Match : RNA_pol (HMM E-Value=2.7e-10) 29 3.9
SB_16437| Best HMM Match : RNA_pol (HMM E-Value=2e-15) 29 3.9
SB_21528| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_55283| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
>SB_36681| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1081
Score = 31.1 bits (67), Expect = 0.73
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +1
Query: 157 EPNTSIEPHNIMYPVFLIEKDNAIEPVHSMPNVTDMVLTNS 279
EP ++EP N + P +E N +EP ++ + + TN+
Sbjct: 96 EPTNTVEPTNTVEPTSTVEPTNTVEPTSTVEPTSTVEPTNT 136
Score = 30.7 bits (66), Expect = 0.97
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +1
Query: 157 EPNTSIEPHNIMYPVFLIEKDNAIEPVHSMPNVTDMVLTNS 279
EP +++EP N + P E N +EP +++ + + TN+
Sbjct: 78 EPTSTVEPTNTVEPTSTAEPTNTVEPTNTVEPTSTVEPTNT 118
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +1
Query: 157 EPNTSIEPHNIMYPVFLIEKDNAIEPVHSMPNVTDMVLTNS 279
EP +++EP N + P +E + +EP ++ + +V T++
Sbjct: 126 EPTSTVEPTNTVEPTSTVEPTSTVEPTSTVVPTSTVVPTST 166
Score = 28.3 bits (60), Expect = 5.1
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +1
Query: 157 EPNTSIEPHNIMYPVFLIEKDNAIEPVHSM 246
EP +++EP N + P +E + +EP +++
Sbjct: 108 EPTSTVEPTNTVEPTSTVEPTSTVEPTNTV 137
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/41 (24%), Positives = 24/41 (58%)
Frame = +1
Query: 157 EPNTSIEPHNIMYPVFLIEKDNAIEPVHSMPNVTDMVLTNS 279
EP +++EP + + P +E + +EP ++ + +V T++
Sbjct: 120 EPTSTVEPTSTVEPTNTVEPTSTVEPTSTVEPTSTVVPTST 160
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/43 (25%), Positives = 21/43 (48%)
Frame = +1
Query: 157 EPNTSIEPHNIMYPVFLIEKDNAIEPVHSMPNVTDMVLTNSYP 285
EP +++EP + + P + + +EP ++ T M T P
Sbjct: 168 EPTSTVEPTSTVVPTSTVVPTSTVEPTSTVEPTTMMAPTTESP 210
>SB_42767| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 6725
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -1
Query: 430 KAARNFGNAFITGLSTESALVPVGSLGSVSTIPKMSIDLSPFSTSSAKRG 281
+A RNF A + GLS ++ V +G + S PK+ D + + RG
Sbjct: 3436 QAIRNFSKAIVDGLSVSASGVHIGYIIYASK-PKLIFDFNTLAPKDTNRG 3484
>SB_18867| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 380
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = -1
Query: 340 TIPKMSIDLSPFSTSSAKRGMSWSTPYLLHSAYYEPVR*HYLFLLK 203
T+ + + D S KR WS Y H+ Y PV H + L K
Sbjct: 61 TVLEYARDFGSAMRESLKRNTKWSAYYYTHTESYNPVPEHKVSLAK 106
>SB_33807| Best HMM Match : RNA_pol (HMM E-Value=2.7e-10)
Length = 469
Score = 28.7 bits (61), Expect = 3.9
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Frame = +1
Query: 61 LIKETKIMSNLY-LTPEHVLQGGYHHAALRKLQEPNTSIEPHNIMYPVF---LIEKDNAI 228
LI+ KI +NL+ E +L G YH R+ ++ I+PH+++ +F L + +
Sbjct: 9 LIQSVKIDANLFNAKSESLLPGFYHSYEFRERRKIGV-IKPHSVVCKLFKGYLADHGDIA 67
Query: 229 EPVHSMP 249
P S+P
Sbjct: 68 MPTTSLP 74
>SB_16437| Best HMM Match : RNA_pol (HMM E-Value=2e-15)
Length = 944
Score = 28.7 bits (61), Expect = 3.9
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Frame = +1
Query: 61 LIKETKIMSNLY-LTPEHVLQGGYHHAALRKLQEPNTSIEPHNIMYPVF---LIEKDNAI 228
LI+ KI +NL+ E +L G YH R+ ++ I+PH+++ +F L + +
Sbjct: 486 LIQSVKIDANLFNAKSESLLPGFYHSYEFRERRKIGV-IKPHSVVCKLFKGYLADHGDIA 544
Query: 229 EPVHSMP 249
P S+P
Sbjct: 545 MPTTSLP 551
>SB_21528| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 343
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 146 ESYRNRTQASNRTILCILCF**KKIMLSNRFIVCR 250
E +N +S R LC++C+ K+ L +R+ VCR
Sbjct: 229 ERSKNADDSSERNPLCLVCY-RKRYRLHHRYSVCR 262
>SB_55283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1342
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 362 WVLRQCLHNPKNEYRFESFLHKFC 291
W+LR +HNP+ RF L +C
Sbjct: 965 WLLRAEMHNPEVSVRFGLMLEAYC 988
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,129,974
Number of Sequences: 59808
Number of extensions: 445254
Number of successful extensions: 1150
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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