Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40297
         (610 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016662-6|AAB66056.2|  523|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z81458-6|CAB03826.2|  328|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z77656-6|CAB01142.2|  328|Caenorhabditis elegans Hypothetical pr...    28   4.5  
U80931-7|AAB38003.2|  526|Caenorhabditis elegans Organic anion t...    28   6.0  
AF152095-1|AAF73198.1|  526|Caenorhabditis elegans multispecific...    28   6.0  
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l...    27   7.9  
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p...    27   7.9  

>AF016662-6|AAB66056.2|  523|Caenorhabditis elegans Hypothetical
           protein C33C12.3 protein.
          Length = 523

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = -1

Query: 397 TGLSTESALVPVGSL---GSVSTIPKMSIDLSPFSTSSAKRGMSWSTPYLLHSAYYEP 233
           TGL+ +   VP+ S    G V +   ++ D S  + +  K    W  PY+ ++  Y P
Sbjct: 132 TGLNLQFGRVPIASTDFSGRVYSYNDVANDYSMQNFNLTKEDFQWKIPYIKNAQKYNP 189


>Z81458-6|CAB03826.2|  328|Caenorhabditis elegans Hypothetical
           protein F07B10.3 protein.
          Length = 328

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 404 FYYWIVY*ICTSTCWVLRQCLHNPKNEYRFESFLH 300
           FY W+V  +  +T W L      P+ +   E FLH
Sbjct: 133 FYAWVVLILSLATSWGLTAAFMFPQTDRTTEIFLH 167


>Z77656-6|CAB01142.2|  328|Caenorhabditis elegans Hypothetical
           protein F07B10.3 protein.
          Length = 328

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 404 FYYWIVY*ICTSTCWVLRQCLHNPKNEYRFESFLH 300
           FY W+V  +  +T W L      P+ +   E FLH
Sbjct: 133 FYAWVVLILSLATSWGLTAAFMFPQTDRTTEIFLH 167


>U80931-7|AAB38003.2|  526|Caenorhabditis elegans Organic anion
           transporter protein 1 protein.
          Length = 526

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -3

Query: 284 GYELVNTISVTFGIL*TGSIALSFSIKNTGYIILCGSMLVFGSCNFL 144
           G  L+N IS+ F +     +A    I N GY++  G+ +    C+ L
Sbjct: 388 GRRLINHISMIFTLASLAIVAGYVYIGNGGYVVAIGTTVALAMCSQL 434


>AF152095-1|AAF73198.1|  526|Caenorhabditis elegans multispecific
           organic anion transporterprotein.
          Length = 526

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -3

Query: 284 GYELVNTISVTFGIL*TGSIALSFSIKNTGYIILCGSMLVFGSCNFL 144
           G  L+N IS+ F +     +A    I N GY++  G+ +    C+ L
Sbjct: 388 GRRLINHISMIFTLASLAIVAGYVYIGNGGYVVAIGTTVALAMCSQL 434


>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
            lineage protein 13 protein.
          Length = 2248

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 374  TSTCWVLRQCLHNPKNEYRFESFLH 300
            +++ W  RQC H+PK+E   + FLH
Sbjct: 1952 SNSSWFCRQCGHSPKSE--IDLFLH 1974


>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
            protein LIN-13 protein.
          Length = 2248

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 374  TSTCWVLRQCLHNPKNEYRFESFLH 300
            +++ W  RQC H+PK+E   + FLH
Sbjct: 1952 SNSSWFCRQCGHSPKSE--IDLFLH 1974


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,040,710
Number of Sequences: 27780
Number of extensions: 332437
Number of successful extensions: 821
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)