Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40297
         (610 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    24   1.3  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    24   1.3  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               22   4.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.1  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -1

Query: 175 RCLCSVPVTFSRQHDGIRLAAHVQVLNTNYSLSLFL*LNENMYFNYDFLQ 26
           RCL S+  T+ R    +   A  Q+L+  Y++ L    N + +  Y FL+
Sbjct: 437 RCLLSLEKTYERDTCLLASDALKQILSAAYNVELH---NSSPFSIYSFLE 483


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -1

Query: 175 RCLCSVPVTFSRQHDGIRLAAHVQVLNTNYSLSLFL*LNENMYFNYDFLQ 26
           RCL S+  T+ R    +   A  Q+L+  Y++ L    N + +  Y FL+
Sbjct: 475 RCLLSLEKTYERDTCLLASDALKQILSAAYNVELH---NSSPFSIYSFLE 521


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -3

Query: 359 VLRQCLHNPKNE 324
           ++RQC+ N KNE
Sbjct: 97  IIRQCVDNAKNE 108


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/29 (27%), Positives = 13/29 (44%)
 Frame = -1

Query: 346 VSTIPKMSIDLSPFSTSSAKRGMSWSTPY 260
           V  +P++   L     S     +SW+ PY
Sbjct: 872 VQEVPEVPYGLKVLDKSGRSVQLSWAAPY 900


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 352  GSVSTIPKMSIDLSPFSTSSAKRG 281
            G    IP+ + D+SP++T     G
Sbjct: 1682 GGPDKIPETAEDISPYATFQLSEG 1705


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 352  GSVSTIPKMSIDLSPFSTSSAKRG 281
            G    IP+ + D+SP++T     G
Sbjct: 1678 GGPDKIPETAEDISPYATFQLSEG 1701


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,160
Number of Sequences: 438
Number of extensions: 4240
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)