Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40297
(610 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g69740.1 68414.m08025 porphobilinogen synthase, putative / de... 49 3e-06
At1g44318.1 68414.m05109 porphobilinogen synthase, putative / de... 42 2e-04
At3g29796.1 68416.m03790 hypothetical protein 29 1.8
At2g23945.1 68415.m02859 chloroplast nucleoid DNA-binding protei... 29 2.4
At5g27880.1 68418.m03344 zinc finger (C2H2 type) family protein ... 29 3.2
At5g51200.1 68418.m06349 expressed protein 28 4.2
At3g11130.1 68416.m01349 clathrin heavy chain, putative similar ... 28 4.2
At1g65790.1 68414.m07466 S-receptor protein kinase, putative sim... 28 4.2
At1g48580.1 68414.m05432 expressed protein 28 4.2
At1g64300.1 68414.m07287 protein kinase family protein contains ... 28 5.6
At1g61080.1 68414.m06877 proline-rich family protein 28 5.6
At1g09700.1 68414.m01089 double-stranded RNA-binding domain (DsR... 28 5.6
At3g15870.1 68416.m02007 fatty acid desaturase family protein si... 27 7.4
At5g39710.1 68418.m04808 pentatricopeptide (PPR) repeat-containi... 27 9.7
At3g08530.1 68416.m00990 clathrin heavy chain, putative similar ... 27 9.7
At1g66160.2 68414.m07510 U-box domain-containing protein similar... 27 9.7
At1g66160.1 68414.m07509 U-box domain-containing protein similar... 27 9.7
At1g09710.1 68414.m01090 myb family transcription factor contain... 27 9.7
>At1g69740.1 68414.m08025 porphobilinogen synthase, putative /
delta-aminolevulinic acid dehydratase, putative similar
to delta-aminolevulinic acid dehydratase (Alad)
GI:493019 [SP|P43210] from Glycine max, SP|P24493 from
Spinacia oleracea, SP|P30124 from Pisum sativum
Length = 430
Score = 48.8 bits (111), Expect = 3e-06
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Frame = +3
Query: 252 CNRYGVDQ-LIPLLAELVEKGLKSILIFGIVETLPKDPTGTSADSVDNPVIKALPKLRAA 428
C R G L+ +A+ G+ SI++F V K+ TG A + + V + + L+
Sbjct: 152 CYRLGWRHGLVQEVAKARAVGVNSIVLFPKVPEALKNSTGDEAYNDNGLVPRTIRLLKDK 211
Query: 429 FPDLLIACDVCLCPYTSHGHCGLLKSGEV 515
+PDL+I DV L PY+S GH G+++ V
Sbjct: 212 YPDLIIYTDVALDPYSSDGHDGIVREDGV 240
Score = 36.7 bits (81), Expect = 0.012
Identities = 17/39 (43%), Positives = 28/39 (71%)
Frame = +2
Query: 494 LTEEWGGIDHEASVKRIAEVALAYAKAGAHVVAPSDMMD 610
+ E G I ++ +V ++ + A++ A+AGA VV+PSDMMD
Sbjct: 234 IVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMD 272
>At1g44318.1 68414.m05109 porphobilinogen synthase, putative /
delta-aminolevulinic acid dehydratase, putative similar
to delta-aminolevulinic acid dehydratase (Alad)
GI:493019 [SP|P43210] from Glycine max, SP|P24493 from
Spinacia oleracea, SP|P30124 from Pisum sativum
Length = 406
Score = 42.3 bits (95), Expect = 2e-04
Identities = 23/75 (30%), Positives = 41/75 (54%)
Frame = +3
Query: 276 LIPLLAELVEKGLKSILIFGIVETLPKDPTGTSADSVDNPVIKALPKLRAAFPDLLIACD 455
LI +A ++ G+ S+ ++ V K PTG A + + + + + L+ FPDL+I D
Sbjct: 138 LIEEVARALDVGVNSVKLYPKVPEALKSPTGEEAFNDNGLIPRTVRLLKDRFPDLVIYTD 197
Query: 456 VCLCPYTSHGHCGLL 500
V Y++ GH G++
Sbjct: 198 VNFDEYSTTGHGGIV 212
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/36 (36%), Positives = 25/36 (69%)
Frame = +2
Query: 503 EWGGIDHEASVKRIAEVALAYAKAGAHVVAPSDMMD 610
E G I ++ ++ ++ + A++ A+AGA VV S+M+D
Sbjct: 214 EDGVILNDETIHQLRKQAVSQARAGADVVCTSEMLD 249
>At3g29796.1 68416.m03790 hypothetical protein
Length = 463
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = -1
Query: 496 KPQCPCDV*GHKHTSHAINKSGKAARNFGNAFITGLSTESALVPVGSLGSVSTI 335
KP CDV H HA++ S + + F+T +TE L PV S S +++
Sbjct: 409 KPSLICDVFAGNHDFHAVS-SQLSHKFVREIFVTKFATEYRLGPVPSQSSRNSV 461
>At2g23945.1 68415.m02859 chloroplast nucleoid DNA-binding
protein-related contains weak similarity to
GP|2541876|dbj|BAA22813.1||D26015 CND41, chloroplast
nucleoid DNA binding protein {Nicotiana tabacum}
Length = 458
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 372 SADSVDNPVIKALPKLRAAFPDLLIACDVCLCPYTSHGHCG 494
S+D + +PV P L + F + +CD C Y +GHCG
Sbjct: 131 SSDHMIHPVFN--PALSSTFVEC--SCDDRFCRYAPNGHCG 167
>At5g27880.1 68418.m03344 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 278
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 88 NLYLTPEHVLQGGYHHAALRKLQEPNTSIEP-HNIMYPVFLIEKDNAIEP 234
N +L H+L GGY AL +++P ++YP F + A+ P
Sbjct: 126 NPFLDKPHILLGGYSQDALSNENHLGITLDPFKRLIYPSFNAGMNMAVVP 175
>At5g51200.1 68418.m06349 expressed protein
Length = 1808
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +3
Query: 285 LLAELVEKGLKSILIFGIVETLPKDPTG 368
LL EL+E GL+ LI I E +DPTG
Sbjct: 158 LLEELIEAGLRQRLITLIKELNREDPTG 185
>At3g11130.1 68416.m01349 clathrin heavy chain, putative similar to
Swiss-Prot:Q00610 clathrin heavy chain 1 (CLH-17) [Homo
sapiens]
Length = 1705
Score = 28.3 bits (60), Expect = 4.2
Identities = 17/66 (25%), Positives = 31/66 (46%)
Frame = +1
Query: 145 RKLQEPNTSIEPHNIMYPVFLIEKDNAIEPVHSMPNVTDMVLTNSYPF*QNLWRKDSNLY 324
+K++EP E ++Y IE+ IE MPNV ++ + + L+ +Y
Sbjct: 1176 QKVKEPKVDSE---LIYAYAKIERLGEIEEFILMPNVANLQHVGDRLYDEALYEAAKIIY 1232
Query: 325 SFLGLW 342
+F+ W
Sbjct: 1233 AFISNW 1238
>At1g65790.1 68414.m07466 S-receptor protein kinase, putative
similar to similar to PIR|T05180|T05180 S-receptor
kinase ARK3 precursor - [Arabidopsis thaliana]
Length = 843
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 16 LFKFVKSRN*NTYSHLIKETKIMSNLYLTPEHVLQ 120
++ F S+ TYS+ I +T + S LYL +LQ
Sbjct: 234 VYNFTASKEEVTYSYRINKTNLYSRLYLNSAGLLQ 268
>At1g48580.1 68414.m05432 expressed protein
Length = 454
Score = 28.3 bits (60), Expect = 4.2
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 252 CNRYG-VDQLIPLLAELVEKGLKSILIFGIVETLPKDPTGTSADSVDNPVI 401
C+ +G VDQ++ ++ GL +++ TL KDPTGT SV VI
Sbjct: 163 CDSWGKVDQVVAIVKTCTPNGLGDVMV-----TL-KDPTGTIDASVHRKVI 207
>At1g64300.1 68414.m07287 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 717
Score = 27.9 bits (59), Expect = 5.6
Identities = 23/60 (38%), Positives = 32/60 (53%)
Frame = -1
Query: 463 KHTSHAINKSGKAARNFGNAFITGLSTESALVPVGSLGSVSTIPKMSIDLSPFSTSSAKR 284
K TS A+ KSG +N N+ I+GL + P S + PK+S LSPF SS+ +
Sbjct: 632 KKTS-ALKKSGDTIKNRRNS-ISGLRS-----PGSSPIKPRSTPKVSSPLSPFGRSSSNK 684
>At1g61080.1 68414.m06877 proline-rich family protein
Length = 907
Score = 27.9 bits (59), Expect = 5.6
Identities = 17/64 (26%), Positives = 32/64 (50%)
Frame = +1
Query: 46 NTYSHLIKETKIMSNLYLTPEHVLQGGYHHAALRKLQEPNTSIEPHNIMYPVFLIEKDNA 225
N+ SHL+ ++ + L+P V + H + ++ QEPN S + I + +K +
Sbjct: 299 NSASHLLWNMRVQALEKLSPIDVKRLAIHILSQKEAQEPNESNDEDVISVVEEIKQKKDE 358
Query: 226 IEPV 237
IE +
Sbjct: 359 IESI 362
>At1g09700.1 68414.m01089 double-stranded RNA-binding domain
(DsRBD)-containing protein contains Pfam profile
PF00035: Double-stranded RNA binding motif; supporting
cDNA gi|12247456|gb|AF276440.1|AF276440
Length = 419
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/59 (22%), Positives = 29/59 (49%)
Frame = -1
Query: 553 DFSYPLYRCFMVDTSPLFSKPQCPCDV*GHKHTSHAINKSGKAARNFGNAFITGLSTES 377
+++ PLY+C V+T ++ C ++ G K+T A A + G + + +++
Sbjct: 114 NYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQSDT 172
>At3g15870.1 68416.m02007 fatty acid desaturase family protein
similar to delta 9 acyl-lipid desaturase (ADS1)
GI:2970034 from [Arabidopsis thaliana]
Length = 292
Score = 27.5 bits (58), Expect = 7.4
Identities = 18/76 (23%), Positives = 30/76 (39%)
Frame = +1
Query: 106 EHVLQGGYHHAALRKLQEPNTSIEPHNIMYPVFLIEKDNAIEPVHSMPNVTDMVLTNSYP 285
E V YHH ++P++ + + ++ + + +E NV D+V Y
Sbjct: 103 EWVSNHRYHHKHCETQRDPHSPTQGFWFSHMAWIFDTSSILENCGGEENVDDLVRQPFYR 162
Query: 286 F*QNLWRKDSNLYSFL 333
F Q YSFL
Sbjct: 163 FLQRTVLLHMMAYSFL 178
>At5g39710.1 68418.m04808 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 747
Score = 27.1 bits (57), Expect = 9.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 252 CNRYGVDQLIPLLAELVEKGLK 317
C Y VD+ + + E+VEKG+K
Sbjct: 461 CRSYDVDEALRVKREMVEKGIK 482
>At3g08530.1 68416.m00990 clathrin heavy chain, putative similar to
Swiss-Prot:Q00610 clathrin heavy chain 1 (CLH-17) [Homo
sapiens]
Length = 1703
Score = 27.1 bits (57), Expect = 9.7
Identities = 16/66 (24%), Positives = 31/66 (46%)
Frame = +1
Query: 145 RKLQEPNTSIEPHNIMYPVFLIEKDNAIEPVHSMPNVTDMVLTNSYPF*QNLWRKDSNLY 324
+K++EP E ++Y I++ IE MPNV ++ + + L+ +Y
Sbjct: 1176 QKVKEPKVDSE---LIYAYAKIDRLGEIEEFILMPNVANLQHVGDRLYDEALYEAAKIIY 1232
Query: 325 SFLGLW 342
+F+ W
Sbjct: 1233 AFISNW 1238
>At1g66160.2 68414.m07510 U-box domain-containing protein similar to
immediate-early fungal elicitor protein CMPG1
[Petroselinum crispum] GI:14582200; contains Pfam
profile PF04564: U-box domain
Length = 415
Score = 27.1 bits (57), Expect = 9.7
Identities = 10/12 (83%), Positives = 12/12 (100%)
Frame = -2
Query: 465 INIHHMLLTNQE 430
I+IHHM+LTNQE
Sbjct: 257 ISIHHMILTNQE 268
>At1g66160.1 68414.m07509 U-box domain-containing protein similar to
immediate-early fungal elicitor protein CMPG1
[Petroselinum crispum] GI:14582200; contains Pfam
profile PF04564: U-box domain
Length = 431
Score = 27.1 bits (57), Expect = 9.7
Identities = 10/12 (83%), Positives = 12/12 (100%)
Frame = -2
Query: 465 INIHHMLLTNQE 430
I+IHHM+LTNQE
Sbjct: 273 ISIHHMILTNQE 284
>At1g09710.1 68414.m01090 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 689
Score = 27.1 bits (57), Expect = 9.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 138 CLEKVTGTEHKHRTAQYYVSCVFNRKR 218
CL+KVT TE + +S F RKR
Sbjct: 174 CLQKVTSTEGMNGNGSAGISMAFRRKR 200
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,975,752
Number of Sequences: 28952
Number of extensions: 300263
Number of successful extensions: 758
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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