Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40296
         (463 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac...    86   2e-18
SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein S24|Sc...    83   2e-17
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    28   0.80 
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   3.2  
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    25   4.3  
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p...    25   7.4  
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    25   7.4  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    25   7.4  
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    25   7.4  
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi...    25   7.4  
SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomy...    25   7.4  

>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score = 86.2 bits (204), Expect = 2e-18
 Identities = 43/62 (69%), Positives = 47/62 (75%)
 Frame = -2

Query: 438 MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFG 259
           MSE   TIRTRKFMTNRLL RKQMV D+LHPGK  +SK EIREKLA+MYK   + V  FG
Sbjct: 1   MSEAV-TIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKTDSECVQAFG 59

Query: 258 FR 253
            R
Sbjct: 60  LR 61



 Score = 77.8 bits (183), Expect = 8e-16
 Identities = 39/70 (55%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
 Frame = -1

Query: 283 SRCSVRIRFQTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKER 107
           S C      +T+FGGG+STGFALIYD+ +  KKFEP +RL R G  E  ++  R+QRK+R
Sbjct: 52  SECVQAFGLRTHFGGGRSTGFALIYDSTESMKKFEPHYRLVRVGQAEPIQKVARQQRKQR 111

Query: 106 KNRMKKVRGT 77
           KNR KKV GT
Sbjct: 112 KNRGKKVFGT 121


>SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 134

 Score = 83.0 bits (196), Expect = 2e-17
 Identities = 40/62 (64%), Positives = 45/62 (72%)
 Frame = -2

Query: 438 MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFG 259
           MSE   TIRTRKFMTNRLL RKQMV D+LHPGK  +SK ++REKL +MYK     V  FG
Sbjct: 1   MSEAV-TIRTRKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKTDASAVQAFG 59

Query: 258 FR 253
            R
Sbjct: 60  LR 61



 Score = 72.9 bits (171), Expect = 2e-14
 Identities = 35/61 (57%), Positives = 47/61 (77%), Gaps = 1/61 (1%)
 Frame = -1

Query: 256 QTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNRMKKVRG 80
           +T++GGG++TGFALIYD ++  KKFEP +RL R G  E  ++  R+QRK+RKNR KKV G
Sbjct: 61  RTHYGGGRTTGFALIYDDVEAMKKFEPHYRLVRVGHAEPIQKVARQQRKQRKNRGKKVFG 120

Query: 79  T 77
           T
Sbjct: 121 T 121


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 27.9 bits (59), Expect = 0.80
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 187 KFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 89
           K+ P  R    G + +KR  RK++ E+KN   K
Sbjct: 539 KYRPNARKPLVGRHREKRQLRKEKPEKKNNSTK 571


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 406 ASANSRCSFTHFELFSII 459
           +S  SRCSFT FE+ SI+
Sbjct: 777 SSVISRCSFTDFEINSIL 794


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
 Frame = -1

Query: 430 RNSDYSHSQVHDQQIVGAQADGLRCFTSRKTNRQQDRDP----*EARQNVQGYSRC-SVR 266
           +NS++S +   +Q    + ADG R +   +   Q+ R+P     + RQ+ Q      +V 
Sbjct: 449 KNSEFSETNAMNQTSNHSHADGQRYYRPEQDRSQRLRNPSDYGRQGRQSSQSQQPAWNVS 508

Query: 265 IRFQTN 248
            R+Q N
Sbjct: 509 SRYQNN 514


>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = -1

Query: 193 AKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 89
           +KK + +    +     +K   +K++KE+K+++KK
Sbjct: 125 SKKVKVRKTSGKESSKREKSKKKKEKKEKKDKLKK 159


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
 Frame = -1

Query: 187 KFEPKHRLARHGLYEKKRPT-----RKQRKERKNRMKKV 86
           +F  KH L RHG  EKKR       R+Q   +  R KKV
Sbjct: 58  EFGTKH-LRRHGRIEKKRRNWKGLFRRQSNWKDGRCKKV 95


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 208 RRSKRIQLTCHLRSLSETEYEHYIGSNLVHFGELLTDLGLADGW 339
           ++ KR+  TC L +L  T Y +     L H  E L D   +D W
Sbjct: 302 KQEKRVPGTCGLSNLGNTCYMNSALQCLTHTRE-LRDFFTSDEW 344


>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 311 SRISVLLTVGFPGCKTSQTICLRANNL 391
           SRI  + ++G    K  Q++CLR N +
Sbjct: 48  SRIQSMASLGLERFKNLQSLCLRQNQI 74


>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
           Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 448

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = -1

Query: 145 EKKRPTRKQRKERKNRMKKVRGT 77
           E+ +P  ++ +E +NR+ ++RGT
Sbjct: 90  ERLKPQDERTQEERNRVDEIRGT 112


>SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 349

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -2

Query: 354 LHPGKPTVSKT--EIREKLAKMYKVTPDVVFVFGFRQTSEVASQ 229
           L  GKP  + T  ++ +     YK   DVVFV G+ + + V+ Q
Sbjct: 75  LELGKPFYNSTVAKVVKSTLDQYKPGMDVVFVSGWEEYTFVSKQ 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,959,519
Number of Sequences: 5004
Number of extensions: 39238
Number of successful extensions: 122
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)