Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40296
         (463 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.4  
SB_45510| Best HMM Match : DUF1279 (HMM E-Value=1.2)                   29   1.9  
SB_18070| Best HMM Match : V-ATPase_G (HMM E-Value=4)                  29   1.9  
SB_44985| Best HMM Match : YhjQ (HMM E-Value=0.37)                     29   1.9  
SB_6351| Best HMM Match : IncA (HMM E-Value=0.13)                      29   1.9  
SB_24027| Best HMM Match : FAD_binding_7 (HMM E-Value=0)               28   4.3  
SB_22216| Best HMM Match : PGAMP (HMM E-Value=4)                       28   4.3  
SB_16395| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_52340| Best HMM Match : FG-GAP (HMM E-Value=7.6e-19)                27   7.6  
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)            27   7.6  
SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)                 27   7.6  
SB_32741| Best HMM Match : Filament (HMM E-Value=0.39)                 27   10.0 
SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17)                   27   10.0 
SB_42837| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   10.0 

>SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +1

Query: 274 YIGSNLVHFGELLTDLGLADGWFSWM*NIANHLLARQQSVGHELASANS 420
           +I  N  +F   + DLG+A  +   +  + +H L R Q+VGH  A   S
Sbjct: 289 FIDFNDFYFSNRVVDLGIALAYIMMLPQVNSH-LTRPQAVGHMFAGYQS 336


>SB_45510| Best HMM Match : DUF1279 (HMM E-Value=1.2)
          Length = 148

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 19/75 (25%), Positives = 33/75 (44%)
 Frame = -2

Query: 420 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFRQTSE 241
           T RTR      +LA K    D  H G    S+  ++E++  ++K     V   G    + 
Sbjct: 7   TRRTRSRTDAAILAVKSFRLDPSHTGSVAKSEKPLKERIKAIFKKYGFTVTAIGLAVATT 66

Query: 240 VASQLDSL*STTHSI 196
           +A+ + SL  +  S+
Sbjct: 67  IAAIVTSLGKSLSSV 81


>SB_18070| Best HMM Match : V-ATPase_G (HMM E-Value=4)
          Length = 166

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -1

Query: 175 KHRLARHGLYEKKRPTRKQRKERKNRMKKVR 83
           +H LA H   +++RP+   R+  K R++K+R
Sbjct: 79  RHGLASHDKKKRERPSLVARERMKKRLRKIR 109


>SB_44985| Best HMM Match : YhjQ (HMM E-Value=0.37)
          Length = 1376

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -1

Query: 202  LDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKV 86
            LDL      KHR  RH   EKK    K RK +KN M+++
Sbjct: 1000 LDLLLAHATKHRGRRHRS-EKKEKANKARKCQKNYMRRL 1037


>SB_6351| Best HMM Match : IncA (HMM E-Value=0.13)
          Length = 417

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -1

Query: 175 KHRLARHGLYEKKRPTRKQRKERKNRMKKVR 83
           +H LA H   +++RP+   R+  K R++K+R
Sbjct: 378 RHGLASHDKKKRERPSLVARERMKKRLRKIR 408


>SB_24027| Best HMM Match : FAD_binding_7 (HMM E-Value=0)
          Length = 1074

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +1

Query: 298 FGELLTDLGLADGWFSWM*NIANHLLA 378
           FGEL+ D G +   F+W+ N++N +LA
Sbjct: 76  FGELMLDAGWSRNAFNWL-NMSNSMLA 101


>SB_22216| Best HMM Match : PGAMP (HMM E-Value=4)
          Length = 132

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = +1

Query: 115 YAVCAWASSSRTGRGGLTCAWARTSWPDRVCRRSKRIQL-TCHLRS 249
           Y  CA   S      G+ C +A  + PD   RRS R    T H RS
Sbjct: 62  YGTCAMPDSGIPPPPGVLCRYAPCAMPDPKMRRSNRSSSGTTHNRS 107


>SB_16395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 61

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -1

Query: 178 PKHRLARHGLYEKKRPTRKQRKERKNRMKK 89
           P+  L  H L ++ R  R+QR ER++R+K+
Sbjct: 21  PQQILFTHRLEQRYRVERRQRLERRHRVKR 50


>SB_52340| Best HMM Match : FG-GAP (HMM E-Value=7.6e-19)
          Length = 616

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 217 KRIQLTCHLRSLSETEYEHYIGSNLVHF 300
           +R+  T  L +LSE E E+Y+G  LV F
Sbjct: 263 ERMSFTPPLTALSEEEAENYLGCGLVVF 290


>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
          Length = 694

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +2

Query: 263 NTNTTSGVTLYILASFSRISVLLTVGFPGCKTSQTICLRANNLLVM 400
           NT  ++ +T     +F  I +++T     C++S TI +  NN + +
Sbjct: 141 NTIISTKITTSTTTTFIIIIIIITTSSHHCRSSTTIVVTTNNTITI 186


>SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)
          Length = 1127

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -1

Query: 187  KFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVR 83
            KFEPKH+  +     KKR +RK+  E + + + +R
Sbjct: 1060 KFEPKHK-KKGRSSSKKRHSRKKGHEEQQKKETIR 1093


>SB_32741| Best HMM Match : Filament (HMM E-Value=0.39)
          Length = 1814

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -2

Query: 333 VSKTEIREKLAKMYKVTPDVVFVFGFRQTSEVASQLDSL*STT-HSI 196
           V  +E  EK+   +K+ P+V+      Q   V+S LDS  +T  HS+
Sbjct: 68  VEPSESAEKVIVFFKLQPEVITPDNLHQNVFVSSMLDSPINTLYHSV 114


>SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17)
          Length = 1249

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -1

Query: 190 KKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKV 86
           +K + + RLA     E+KR   ++RKE++ + K++
Sbjct: 202 RKLQEEARLAAQRALEEKRKLEEERKEQERKEKEL 236


>SB_42837| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -1

Query: 145 EKKRPTRKQRKERKNRMKK 89
           EKKR  +KQ+K++K + KK
Sbjct: 16  EKKRKKKKQKKKKKKKKKK 34


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,937,842
Number of Sequences: 59808
Number of extensions: 298924
Number of successful extensions: 905
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 945255773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)