Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40295
(782 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb... 76 5e-15
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 36 0.009
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 29 0.57
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo... 27 2.3
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|... 27 2.3
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 27 2.3
SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple... 27 3.0
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi... 27 4.0
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 5.3
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 26 5.3
SPAC17G8.04c |arc15|arc5, arc5|ARP2/3 actin-organizing complex s... 26 7.0
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 26 7.0
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc... 26 7.0
SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces... 26 7.0
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||... 25 9.3
>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1095
Score = 76.2 bits (179), Expect = 5e-15
Identities = 38/86 (44%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Frame = +1
Query: 256 ICRIMGKKFSQYLPMVMEPVMRTAAMKPEVALLDNEDLETIEGDLD-WHFVTLGEQQNFG 432
ICR++G F +L VM P++ A KP+ ++D+E E+ + D W F+ + QQ G
Sbjct: 613 ICRVLGSDFVPFLSSVMPPLLVAATSKPDFTIIDDEVDESKYSEQDGWEFIPVHGQQ-VG 671
Query: 433 IKTAGLEDKASACDMLVCYARELKED 510
I+T+ LEDK +A +MLVCYA ELK D
Sbjct: 672 IRTSTLEDKCTATEMLVCYAAELKAD 697
Score = 74.5 bits (175), Expect = 2e-14
Identities = 35/84 (41%), Positives = 55/84 (65%)
Frame = +2
Query: 5 FVKYYDRLMPCLKYIIANATTDQLKMLRGKTIECVSLIGLAVGEEKFMSDASEVMDLLLK 184
F KY+D +MP L ++ A + + LRGKT+EC +LI LAVG+++F+ + E++ +L
Sbjct: 531 FEKYFDAIMPLLFNVLQQADGKEFRTLRGKTMECATLIALAVGKQRFLPVSQELIQIL-- 588
Query: 185 THTEGEQLPADDPQTSYLISAWSK 256
+ + +DDPQ SYLISAW +
Sbjct: 589 GNIQMGITDSDDPQASYLISAWGR 612
Score = 48.0 bits (109), Expect = 2e-06
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Frame = +3
Query: 483 LLC--SRTKGRFAEYAEDVV-KLMVPMLKFCFHDNVRTAAAESLPYLLEC---ARIRGPQ 644
L+C + K F Y +V+ +++P LKF FHD VR+A + +P LL A R P
Sbjct: 687 LVCYAAELKADFDPYVNEVLTSVVLPGLKFFFHDGVRSACCKCIPQLLNARILASNRDPA 746
Query: 645 YIQGMWAYIVPELLKAIDSEP 707
+ +W I+ +LL I +EP
Sbjct: 747 KVNELWEPILRKLLDHIQNEP 767
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 35.5 bits (78), Expect = 0.009
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +2
Query: 2 DFVKYYDRLMPCLKYIIANATTDQLKMLRGKTIECVSLIGLAVGEEKFMSDASEVMDL 175
DF+ Y++R M L + D+ LRG ++ + I AVG++ F+ +++ L
Sbjct: 501 DFIPYFERTMASLSQCLHTTDDDEGYELRGTVMDTLGAIANAVGKQAFLPYTEQLIQL 558
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 29.5 bits (63), Expect = 0.57
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 634 AARSIFKECGLT*FLNCLKPLTLSPNQEVQVELLNSLAKCIEL 762
AA +IF+ CGL ++ N +V+ E L L +C++L
Sbjct: 420 AANAIFESCGLNDIMDETLEFLKHKNPQVKTETLRWLNRCLQL 462
>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 509
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 386 SPSMVSKSSLSRSATSGFIAAVRITGSITI 297
SP+ SSL+ S+ GF+A R+ G + I
Sbjct: 198 SPTTYEVSSLAYSSDGGFLAIARVNGFVEI 227
>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 885
Score = 27.5 bits (58), Expect = 2.3
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -2
Query: 73 LISSSIGNYILQTRHESVIIFDKV 2
++ S G+ + Q +H+ +I+FDKV
Sbjct: 645 VMDSVTGSIVYQNKHQGIILFDKV 668
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = -1
Query: 473 SQAEALSSSPAVLMPKFCCSPSVTKCQSRSPSMVSKSSLSRSATSGFIAA 324
+ + LS+ P S S++ + S ++ +SSLS S TSG ++
Sbjct: 947 ASSNTLSTEPKTFSSSSTLSESISSINTNSLTVKPESSLSSSTTSGLTSS 996
>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
subunit |Schizosaccharomyces pombe|chr 2|||Manual
Length = 442
Score = 27.1 bits (57), Expect = 3.0
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = -1
Query: 755 IHLAKLLSSSTCTSWFGLRVNGFKQFRNYVSPHSLNILRAANA 627
+ L+ L +ST T NGF Q R YVS S N+LR N+
Sbjct: 123 VKLSLQLDTSTPTLEDSFDGNGFIQ-RKYVSDASRNVLRTFNS 164
>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1419
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 134 EEKFMSDASEVMDLLLKTHTEGEQLPADDPQTSYLISA 247
E ++ DA +++DL+ K + L D+P+T +L A
Sbjct: 975 EIEYGKDALDLVDLIPKEFPTSKDLGIDEPKTVFLTGA 1012
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.2 bits (55), Expect = 5.3
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = -1
Query: 476 MSQAEALSSSPAVLMPKFCCSPSVTKCQSRSPSMVSKSSLSRSATSGFIAAVRITGSITI 297
++ + +SSS + S SV S S VS +S S++ GF ++ TGS +
Sbjct: 3474 LNSSTPISSSTVITSSVVIGSSSVLSYASSIVSSVSLNSSLLSSSGGFSSSAFSTGSSSF 3533
Query: 296 GKYCEN 279
EN
Sbjct: 3534 SLTSEN 3539
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 26.2 bits (55), Expect = 5.3
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = -1
Query: 482 TNMSQAEALSSSPAVLMPKFCCSPSVTKCQSR--SPSMVSKSSLSRSATSGFIAAVRITG 309
++ S + + SSS + K SPS +K S+ S S ++ ++ + S++SG I + T
Sbjct: 189 SSSSSSSSKSSSSSSSSSKSSASPSSSKSSSKFSSSSFITSTTPASSSSSGAIVSNAKTA 248
Query: 308 S 306
S
Sbjct: 249 S 249
>SPAC17G8.04c |arc15|arc5, arc5|ARP2/3 actin-organizing complex
subunit Arc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 25.8 bits (54), Expect = 7.0
Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 5/129 (3%)
Frame = +1
Query: 409 LGEQQNFGIKTAGLEDKASACDMLVCYARELKE--DLLNMLKTL*S*WCPC*SFVFTIM* 582
L EQ F I+ E +A L+ AR + + L LKTL S + P + V +
Sbjct: 16 LTEQDIFPIRNETAEQVQAAVSQLIPQARSAIQTGNALQGLKTLLS-YVPYGNDVQEVRT 74
Query: 583 ELLQQNPCLISLNAPAFAARSIFKECG---LT*FLNCLKPLTLSPNQEVQVELLNSLAKC 753
+ L ++S N A + KEC + +N + +P LLN K
Sbjct: 75 QYLNAFVDVLS-NIRAADIPAFVKECSTEEIDNIVNFIYRGLANPQAYNSSVLLNWHEKV 133
Query: 754 IELWGMGCL 780
+E+ G+GC+
Sbjct: 134 VEISGIGCI 142
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 25.8 bits (54), Expect = 7.0
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -1
Query: 485 QTNMSQAEALSSSPAVLMPKFCCSPSVTKCQSRSPSMVSKSSLSRSATS 339
Q N+ + A SSS + S + + S +PS S SS S S++S
Sbjct: 107 QFNIVEGAASSSSSSSSSSSSLVSSTTSSSSSATPSTTSSSSSSSSSSS 155
>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 765
Score = 25.8 bits (54), Expect = 7.0
Identities = 16/56 (28%), Positives = 31/56 (55%)
Frame = +2
Query: 74 LKMLRGKTIECVSLIGLAVGEEKFMSDASEVMDLLLKTHTEGEQLPADDPQTSYLI 241
L++L K + +IG VGE K ++ S+ + KT++ ++ A P++SY +
Sbjct: 406 LEVLTSKGLTICGMIGNGVGENKKGTNISDTQIGISKTNS--WKMAAISPKSSYAL 459
>SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 265
Score = 25.8 bits (54), Expect = 7.0
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = +3
Query: 540 LMVPMLKFCFHDNVRTAAAESLPYLLECARIRGPQYIQGMW---AYIVPELLKAI 695
L VP L+ FH+ + RIRG ++I+G+W Y+ +L K +
Sbjct: 26 LKVPKLQESFHELYKKKPKTFDSPEFHEGRIRGQKHIEGLWFVQTYLEVDLSKKV 80
>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 9.3
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = -3
Query: 603 GILLQQFSHYRENKTSTWAPLALQRLQHIQQIFL*FSSIAN 481
G+LL FS+Y NK+S +A ++L+ +Q S +AN
Sbjct: 547 GVLLGSFSNYLVNKSSVPVMVARKKLKKNKQRLGNQSRLAN 587
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,082,216
Number of Sequences: 5004
Number of extensions: 60922
Number of successful extensions: 210
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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