Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40295
(782 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0816 + 27928812-27930059,27931007-27931111,27931197-279312... 99 5e-21
07_03_0997 - 23203166-23203330,23203627-23203693,23203771-232038... 94 1e-19
09_02_0610 - 11206198-11206588,11206812-11207001,11207116-112071... 30 1.8
04_02_0031 + 8874025-8874180,8882152-8882550,8882651-8882987,888... 30 2.4
02_01_0242 + 1600567-1600870,1601209-1601219,1601233-1601319 30 2.4
01_01_1214 - 9793854-9794003,9795418-9795456,9795604-9795702,979... 30 2.4
03_05_0328 - 23170019-23170168,23170865-23170903,23171043-231711... 29 3.2
07_03_1091 + 23899825-23900649,23900750-23900998,23901104-239011... 28 7.3
04_03_0749 + 19280265-19280511,19280584-19280651,19280737-19281834 28 7.3
11_06_0151 - 20643032-20643085,20643202-20643307,20643415-206434... 28 9.6
05_04_0272 + 19624898-19625071,19625909-19626370,19626471-196269... 28 9.6
>03_05_0816 +
27928812-27930059,27931007-27931111,27931197-27931262,
27931337-27931501,27931671-27931745,27931829-27931983,
27932234-27932369,27932454-27932523,27932602-27932729,
27932838-27932894,27933326-27933511,27934031-27934123,
27934488-27934573,27934668-27934734,27934873-27934939,
27935016-27935152,27935618-27935709,27935849-27935915,
27936058-27936078
Length = 1006
Score = 98.7 bits (235), Expect = 5e-21
Identities = 43/87 (49%), Positives = 64/87 (73%)
Frame = +2
Query: 5 FVKYYDRLMPCLKYIIANATTDQLKMLRGKTIECVSLIGLAVGEEKFMSDASEVMDLLLK 184
F KYYD +MP LK I+ NAT +MLR K++EC+SL+G+AVG++KF DA +VM++L+
Sbjct: 476 FQKYYDAVMPYLKSILMNATDKSNRMLRAKSMECISLVGMAVGKQKFKDDAKQVMEVLMT 535
Query: 185 THTEGEQLPADDPQTSYLISAWSKFAE 265
+G Q+ ADDP TSY++ AW++ +
Sbjct: 536 --LQGSQMEADDPITSYMLQAWARLCK 560
Score = 70.9 bits (166), Expect = 1e-12
Identities = 52/182 (28%), Positives = 91/182 (50%), Gaps = 11/182 (6%)
Frame = +1
Query: 256 ICRIMGKKFSQYLPMVMEPVMRTAAMKPEVALLDN--EDLETIEGDLDWHFVTLGEQQNF 429
+C+ +G+ F Y+ +VM P++++A +KP+V++ ED D +TLG+++
Sbjct: 558 LCKCLGQDFLPYMNVVMPPLLQSAQLKPDVSVTSAGPEDENGESDDEGVETITLGDKR-I 616
Query: 430 GIKTAGLEDKASACDMLVCYARELKEDLLNMLKTL*S*WCPC*SFVF---------TIM* 582
GI+T+ LE+KA+AC+ML CYA ELKE + + + P F F + M
Sbjct: 617 GIRTSLLEEKATACNMLCCYADELKEGFFPWIDQVATTLVPLLKFYFHEEVRKAAVSAMP 676
Query: 583 ELLQQNPCLISLNAPAFAARSIFKECGLT*FLNCLKPLTLSPNQEVQVELLNSLAKCIEL 762
ELL+ I + S K+ ++ + P+ ++ +L SL + I+L
Sbjct: 677 ELLRSAKLAIEKSQSQGRDESYLKQLSDYIVPALVEAIHKEPDTQICASMLESLNESIQL 736
Query: 763 WG 768
G
Sbjct: 737 SG 738
>07_03_0997 -
23203166-23203330,23203627-23203693,23203771-23203862,
23204820-23204956,23205050-23205116,23205212-23205278,
23205356-23205441,23206061-23206153,23206337-23206522,
23207316-23207372,23207455-23207582,23207662-23207731,
23207815-23207950,23208378-23208529,23208606-23208680,
23208765-23208929,23209063-23209128,23209229-23209333,
23209929-23210132,23210462-23211715
Length = 1123
Score = 93.9 bits (223), Expect = 1e-19
Identities = 41/87 (47%), Positives = 62/87 (71%)
Frame = +2
Query: 5 FVKYYDRLMPCLKYIIANATTDQLKMLRGKTIECVSLIGLAVGEEKFMSDASEVMDLLLK 184
F KYYD +MP LK I+ NAT +MLR K++EC+SL+G+AVG++KF DA +VM++L+
Sbjct: 546 FKKYYDAVMPYLKAILMNATDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMS 605
Query: 185 THTEGEQLPADDPQTSYLISAWSKFAE 265
+G + DDP TSY++ AW++ +
Sbjct: 606 --LQGTTMENDDPITSYMLQAWARLCK 630
Score = 79.4 bits (187), Expect = 3e-15
Identities = 55/181 (30%), Positives = 91/181 (50%), Gaps = 10/181 (5%)
Frame = +1
Query: 256 ICRIMGKKFSQYLPMVMEPVMRTAAMKPEVALLDNEDLETIEGDLDW-HFVTLGEQQNFG 432
+C+ +G+ F Y+ +VM P++++A +KP+V + E + IE D D +TLG+++ G
Sbjct: 628 LCKCLGQDFLPYMNVVMPPLLQSAQLKPDVTITSAESDDDIESDDDSIETITLGDKR-IG 686
Query: 433 IKTAGLEDKASACDMLVCYARELKEDLLNMLKTL*S*WCPC*SFVF---------TIM*E 585
I+T+ LE+KA+AC+ML CYA ELKE + + P F F M E
Sbjct: 687 IRTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRRAAVAAMPE 746
Query: 586 LLQQNPCLISLNAPAFAARSIFKECGLT*FLNCLKPLTLSPNQEVQVELLNSLAKCIELW 765
LL+ + S K+ ++ L P E+ +L+SL +C++L
Sbjct: 747 LLRSAKLAVEKGLAQGRDESYVKQLSDYIIPALVEALHKEPETEMCSSMLDSLNECMQLS 806
Query: 766 G 768
G
Sbjct: 807 G 807
>09_02_0610 -
11206198-11206588,11206812-11207001,11207116-11207184,
11207546-11207672,11207809-11208128,11208196-11208353,
11208503-11208580,11209484-11209555,11209994-11210135,
11212580-11213064,11214362-11214947,11215093-11215177
Length = 900
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Frame = -1
Query: 743 KLLSSSTCTSWFGLRVNGFKQFR-NYVSPHSLNILRAANAGAFKEIRQGFCCSSSHIIVK 567
K ST W L +NG +QF + +LN R G F + G S + VK
Sbjct: 567 KKAPGSTTDHWSHLPINGSRQFTYEELKNFTLNFQRFIGQGGFGHVYYGCLEDGSEVAVK 626
Query: 566 TKLQHGHH 543
+ + H
Sbjct: 627 MRSESSLH 634
>04_02_0031 +
8874025-8874180,8882152-8882550,8882651-8882987,
8883234-8884060
Length = 572
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +1
Query: 586 LLQQNPCLISLNAPAFAARSIFKECGLT*FLNCLKPLTLSPNQEVQVELLNS 741
L Q P + NAPA R K+C ++CL T+SP + Q E L++
Sbjct: 98 LTQPFPADLPNNAPAAQRREHKKQCNDYLDISCLMLATMSPELQRQYEALDA 149
>02_01_0242 + 1600567-1600870,1601209-1601219,1601233-1601319
Length = 133
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 20 DRLMPCLKYIIANATTDQLKMLRGKTIECVSLIGLAVGEEKFM 148
D M CL A T L MLRG+T+ + L+ +A +++ +
Sbjct: 84 DCRMICLNSFCGEAATGYLLMLRGETMLMLQLVSMAAAKDELV 126
>01_01_1214 -
9793854-9794003,9795418-9795456,9795604-9795702,
9795779-9795907,9796473-9796619,9797513-9797643,
9798497-9798716,9798858-9798951,9799021-9799133,
9799799-9799903,9800008-9800112,9800762-9800849,
9800933-9801054,9801130-9801189,9802313-9802408,
9802506-9802658,9802752-9802838,9803995-9804062,
9804429-9804552,9805057-9805152,9805250-9805359,
9805459-9805573,9806877-9806942,9807260-9807420,
9807927-9808167
Length = 972
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 256 ICRIMGKKFSQYLPMVMEPVMRTAAMKPEV-ALLDNEDLETIEGDLDW 396
+CR + S Y+ +MEP+++ + + A D +L IEG L W
Sbjct: 435 LCRFQYQNSSIYIINIMEPLLQAYTERSRLPAPGDANELSVIEGQLTW 482
>03_05_0328 -
23170019-23170168,23170865-23170903,23171043-23171141,
23171214-23171342,23171915-23172061,23172959-23173089,
23173938-23174157,23174294-23174387,23174469-23174581,
23174727-23174861,23175231-23175335,23175440-23175544,
23176240-23176327,23176415-23176536,23176611-23176670,
23177434-23177529,23177620-23177772,23177865-23177951,
23179179-23179246,23179603-23179726,23180235-23180330,
23180430-23180539,23180647-23180761,23181622-23181699,
23181843-23181908,23182203-23182363,23182781-23183099
Length = 1069
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 256 ICRIMGKKFSQYLPMVMEPVMRTAAMKPEV-ALLDNEDLETIEGDLDW 396
+CR + S Y+ +MEP+++ + + A D +L IEG L W
Sbjct: 487 LCRFQYQNSSIYIINIMEPLLQAYMERSRLPAPGDANELSVIEGQLTW 534
>07_03_1091 +
23899825-23900649,23900750-23900998,23901104-23901195,
23901413-23902193
Length = 648
Score = 28.3 bits (60), Expect = 7.3
Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Frame = -1
Query: 437 LMPKFCCSPSVTKCQSRSPSMVSKSS---LSRSATSGFIAAVRITGSITIGKYCENFL 273
+ P FCCS C RS S S + SA A+R + KY + FL
Sbjct: 494 MTPLFCCSKPKCNCSKRSSRKASDGSSQGSNMSAAMDLAVALRSECNCWFLKYIDKFL 551
>04_03_0749 + 19280265-19280511,19280584-19280651,19280737-19281834
Length = 470
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +2
Query: 98 IECVSLIGLAVGEEKFMSDASEVMDLLLKTHTEGEQLPADDPQTSYL 238
++ ++ +GL + + F SD S MD+ T +G ++ DD SY+
Sbjct: 58 VQVIADLGLVIRKAYFSSDGSWFMDVFNVTDRDGNKV-LDDQTISYI 103
>11_06_0151 -
20643032-20643085,20643202-20643307,20643415-20643495,
20643588-20643715,20643829-20643903,20644853-20645374,
20646622-20646687,20647990-20648076,20648173-20648247,
20648705-20648821,20648932-20649015,20649152-20649217,
20649352-20649417,20650079-20650150,20650231-20650332,
20650428-20650605,20650700-20650755,20653159-20653269,
20653354-20653422,20653558-20653741,20653826-20653914,
20654070-20654147,20654509-20654631,20654755-20654874,
20654975-20655055,20655285-20655431,20655533-20655611,
20657114-20657223,20659138-20659236,20659467-20659582,
20659673-20659781,20659839-20660069,20660152-20660417,
20661349-20661506,20661601-20661751,20661897-20661966,
20662203-20662232
Length = 1451
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
Frame = +2
Query: 134 EEKFMSDASEVMDLLLKTH--TEGEQLPADDPQTS 232
+E +DA++ M+++ +T + E PA+DPQTS
Sbjct: 21 QELVAADAAQPMEVVAQTEAASTAESQPAEDPQTS 55
>05_04_0272 +
19624898-19625071,19625909-19626370,19626471-19626905,
19626992-19627237,19627318-19628085,19628245-19628417,
19629337-19629440,19629525-19630127,19630210-19630214
Length = 989
Score = 27.9 bits (59), Expect = 9.6
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = -1
Query: 473 SQAEALSSSPAVLMPKFCCSPSVTKCQSRSP-SMVSKSSL--SRSATSGFIAAVRITGSI 303
S + LSS+ + SP V+ S S S+V++ ++ S+ +G I + G
Sbjct: 256 SNSPLLSSTGRLSPQNLTPSPGVSPSTSPSSGSLVARYAMESSKQIAAGIINLGDM-GYK 314
Query: 302 TIGKYCENFLP 270
T+ KYC+ FLP
Sbjct: 315 TLSKYCQEFLP 325
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,890,467
Number of Sequences: 37544
Number of extensions: 390463
Number of successful extensions: 1015
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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