Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40295
(782 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7742| Best HMM Match : HEAT (HMM E-Value=9e-23) 119 3e-27
SB_46477| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.80
SB_37761| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_42606| Best HMM Match : Ank (HMM E-Value=3.4e-08) 28 7.4
SB_22076| Best HMM Match : MIP (HMM E-Value=3.89981e-42) 28 7.4
SB_16588| Best HMM Match : Tropomyosin (HMM E-Value=3.3) 28 7.4
SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
>SB_7742| Best HMM Match : HEAT (HMM E-Value=9e-23)
Length = 940
Score = 119 bits (286), Expect = 3e-27
Identities = 51/87 (58%), Positives = 68/87 (78%)
Frame = +2
Query: 5 FVKYYDRLMPCLKYIIANATTDQLKMLRGKTIECVSLIGLAVGEEKFMSDASEVMDLLLK 184
F +YDR MP LKYI+ N+ + ++LRGKTIEC+S IGLAVG++KF+ DASE+M LLLK
Sbjct: 585 FAPHYDRFMPSLKYIVQNSNSTDYRLLRGKTIECISFIGLAVGKDKFLPDASEIMQLLLK 644
Query: 185 THTEGEQLPADDPQTSYLISAWSKFAE 265
T T+ + L ADDPQ SY+ISAW++ +
Sbjct: 645 TQTDIDSLEADDPQVSYMISAWARMCK 671
Score = 101 bits (242), Expect = 7e-22
Identities = 49/97 (50%), Positives = 65/97 (67%)
Frame = +3
Query: 483 LLCSRTKGRFAEYAEDVVKLMVPMLKFCFHDNVRTAAAESLPYLLECARIRGPQYIQGMW 662
L K FA YAE+VV+LMVP+LKF FH+ VR+AAAES PYLLECA+ +G ++ MW
Sbjct: 724 LYAKELKEGFAPYAEEVVQLMVPLLKFYFHELVRSAAAESFPYLLECAKFKGEAAVRQMW 783
Query: 663 AYIVPELLKAIDSEPEPRSAS*TAQQLSQMYRTLGHG 773
AYI +LLKA+ SEP+ + ++ TLG+G
Sbjct: 784 AYICSDLLKAVRSEPDSDIQIIFLENFAKCVETLGNG 820
Score = 78.2 bits (184), Expect = 7e-15
Identities = 52/175 (29%), Positives = 79/175 (45%)
Frame = +1
Query: 256 ICRIMGKKFSQYLPMVMEPVMRTAAMKPEVALLDNEDLETIEGDLDWHFVTLGEQQNFGI 435
+C+IMG +F+QY+P+VM P+M+ + LL Q FGI
Sbjct: 669 MCKIMGTEFTQYMPLVMPPLMKVLVSNLKSPLLT---------------------QKFGI 707
Query: 436 KTAGLEDKASACDMLVCYARELKEDLLNMLKTL*S*WCPC*SFVFTIM*ELLQQNPCLIS 615
T GLE+K++AC MLV YA+ELKE + + P F F +
Sbjct: 708 NTVGLEEKSTACQMLVLYAKELKEGFAPYAEEVVQLMVPLLKFYFHELVRSAAAESFPYL 767
Query: 616 LNAPAFAARSIFKECGLT*FLNCLKPLTLSPNQEVQVELLNSLAKCIELWGMGCL 780
L F + ++ + LK + P+ ++Q+ L + AKC+E G GCL
Sbjct: 768 LECAKFKGEAAVRQMWAYICSDLLKAVRSEPDSDIQIIFLENFAKCVETLGNGCL 822
>SB_46477| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6116
Score = 31.5 bits (68), Expect = 0.80
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = +1
Query: 295 PMVMEP-VMRTAAMKPEVALLDNEDLET-IEGDLDWHFVTLGEQQNFGIKTAGLEDKASA 468
P ++ P V +AA+ +A L+ D ++ + G L + FV+ NF + TAG+ A+A
Sbjct: 2997 PALLTPAVPESAAVGSMLASLNCSDTDSGLNGQLTYTFVSGNTAGNFNVSTAGVVSLATA 3056
Query: 469 CD 474
D
Sbjct: 3057 LD 3058
>SB_37761| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 540
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +3
Query: 564 CFHDNVRTAAAESLPYLLECARIRGPQYIQGMWAYIVP 677
C H N+ A SL Y E +R YIQ W+ I+P
Sbjct: 196 CRHGNIVHEIAHSLGYFHEHSRPDRDDYIQVKWSNIMP 233
>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3112
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = -1
Query: 665 SPHSLNILRAANAGAFKEIRQGFCCSSSHIIVKT-KLQHGH 546
SP+S L+ NAG++K I G ++++++ KT KL+ H
Sbjct: 901 SPNSTGALQCYNAGSWKNI-SGISAATAYVVAKTDKLRFMH 940
>SB_42606| Best HMM Match : Ank (HMM E-Value=3.4e-08)
Length = 551
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +1
Query: 625 PAFAARSIFKECGLT*FLNCLKPLTLSPNQEVQVELLNSLAKCIE 759
PA A KE L F+ CL L L P ++ +N + C+E
Sbjct: 144 PAIQAEET-KETALHRFVLCLNHLALGPAHKISPRKINIIISCLE 187
>SB_22076| Best HMM Match : MIP (HMM E-Value=3.89981e-42)
Length = 365
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 168 WIYFLRPTQKVNSCLLMILRHHILSQPGLNLQNNGQE 278
W+Y++ P SCL + HH+ +Q +N + + E
Sbjct: 295 WMYWIGPI--AGSCLASLCYHHVFAQRAINARISSAE 329
>SB_16588| Best HMM Match : Tropomyosin (HMM E-Value=3.3)
Length = 430
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = +1
Query: 454 DKASACDMLVCYARELKEDLLNMLKTL 534
D A D+L C R LKEDLLN L+ L
Sbjct: 341 DHPRANDVLTCL-RNLKEDLLNYLRNL 366
>SB_37749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1103
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/58 (24%), Positives = 24/58 (41%)
Frame = +1
Query: 292 LPMVMEPVMRTAAMKPEVALLDNEDLETIEGDLDWHFVTLGEQQNFGIKTAGLEDKAS 465
+PM + VMR + +P A + D+ E DW +Q+ + E K +
Sbjct: 928 IPMAADGVMRGSGFRPMSAEASHRDIVEAETKRDWRDARGADQEIIAARMRARESKTA 985
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,212,212
Number of Sequences: 59808
Number of extensions: 461678
Number of successful extensions: 1178
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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