Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40295
         (782 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta...    87   1e-17
Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical p...    28   6.6  
Z92811-3|CAB07274.1| 1083|Caenorhabditis elegans Hypothetical pr...    28   8.7  
Z92789-9|CAB07223.1| 1083|Caenorhabditis elegans Hypothetical pr...    28   8.7  
Z92780-8|CAI46553.1|  587|Caenorhabditis elegans Hypothetical pr...    28   8.7  
Z81068-16|CAJ30230.1|  587|Caenorhabditis elegans Hypothetical p...    28   8.7  

>AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta
           family protein 3 protein.
          Length = 1092

 Score = 87.0 bits (206), Expect = 1e-17
 Identities = 37/83 (44%), Positives = 61/83 (73%)
 Frame = +1

Query: 259 CRIMGKKFSQYLPMVMEPVMRTAAMKPEVALLDNEDLETIEGDLDWHFVTLGEQQNFGIK 438
           C I+G  F+ +LP+VM+PV+R A  +P+  + +NED+   E  +++H +  G ++  GI+
Sbjct: 604 CSILGADFAPFLPVVMDPVLRAARYRPDFNIFNNEDVHENEEGVEYHGI--GGEKTVGIR 661

Query: 439 TAGLEDKASACDMLVCYARELKE 507
           T+GLE+KA+ACDMLV +A+E+KE
Sbjct: 662 TSGLEEKATACDMLVAFAKEMKE 684



 Score = 78.6 bits (185), Expect = 5e-15
 Identities = 42/86 (48%), Positives = 62/86 (72%), Gaps = 1/86 (1%)
 Frame = +2

Query: 5   FVKYYDRLMPCLKYIIANATTDQLKMLRGKTIECVSLIGLAVGEEKFMSDASEVMDLLLK 184
           F +++ RL+P L +I+ N    +LK LRGKTIEC+SLIG AVG+E+F + A E+++LL  
Sbjct: 524 FKEHHARLIPNLVHILQNV--GELKELRGKTIECISLIGYAVGKEQFHATAIEILNLL-- 579

Query: 185 THTEG-EQLPADDPQTSYLISAWSKF 259
              +G + L  DDPQ SY+IS+W++F
Sbjct: 580 --GDGMKDLAIDDPQYSYMISSWTRF 603



 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 24/70 (34%), Positives = 36/70 (51%)
 Frame = +3

Query: 501 KGRFAEYAEDVVKLMVPMLKFCFHDNVRTAAAESLPYLLECARIRGPQYIQGMWAYIVPE 680
           K  F  Y  DV +L +  L F  HD VRTA+AE +P LL C   +G    + +W   +  
Sbjct: 683 KEAFMPYVVDVYELAIKNLDFGLHDGVRTASAEIMPCLLTCVEKQGLADKRRLWCEFLKA 742

Query: 681 LLKAIDSEPE 710
           L  +++ E +
Sbjct: 743 LTTSMEEEDD 752


>Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical
           protein T22H6.6a protein.
          Length = 1405

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 608 RQGFCCSSSHIIVKTKLQHGHH 543
           R+G+C  S H+ +K+K  HGHH
Sbjct: 482 RRGYC--SRHLSLKSKPPHGHH 501


>Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical
           protein T22H6.6a protein.
          Length = 1405

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 608 RQGFCCSSSHIIVKTKLQHGHH 543
           R+G+C  S H+ +K+K  HGHH
Sbjct: 482 RRGYC--SRHLSLKSKPPHGHH 501


>Z92811-3|CAB07274.1| 1083|Caenorhabditis elegans Hypothetical protein
            T01G1.3 protein.
          Length = 1083

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 691  PLTLSPNQEVQVELLNSLAKCI 756
            P+ LSP  E  +E +N+LA+CI
Sbjct: 973  PIQLSPEDEKIIEPINTLAQCI 994


>Z92789-9|CAB07223.1| 1083|Caenorhabditis elegans Hypothetical protein
            T01G1.3 protein.
          Length = 1083

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 691  PLTLSPNQEVQVELLNSLAKCI 756
            P+ LSP  E  +E +N+LA+CI
Sbjct: 973  PIQLSPEDEKIIEPINTLAQCI 994


>Z92780-8|CAI46553.1|  587|Caenorhabditis elegans Hypothetical
           protein F25H5.1b protein.
          Length = 587

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/48 (27%), Positives = 27/48 (56%)
 Frame = -1

Query: 482 TNMSQAEALSSSPAVLMPKFCCSPSVTKCQSRSPSMVSKSSLSRSATS 339
           ++ SQ    ++  A ++P F CSP + +  SR P++++ ++   S  S
Sbjct: 27  SSASQPPPSTTKHAKILPSFSCSPPMERKDSR-PTLITANTADHSVGS 73


>Z81068-16|CAJ30230.1|  587|Caenorhabditis elegans Hypothetical
           protein F25H5.1b protein.
          Length = 587

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/48 (27%), Positives = 27/48 (56%)
 Frame = -1

Query: 482 TNMSQAEALSSSPAVLMPKFCCSPSVTKCQSRSPSMVSKSSLSRSATS 339
           ++ SQ    ++  A ++P F CSP + +  SR P++++ ++   S  S
Sbjct: 27  SSASQPPPSTTKHAKILPSFSCSPPMERKDSR-PTLITANTADHSVGS 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,245,239
Number of Sequences: 27780
Number of extensions: 349330
Number of successful extensions: 958
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)