Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40295
(782 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing p... 98 7e-21
At5g06120.1 68418.m00680 Ran-binding protein, putative similar t... 35 0.070
At5g48120.1 68418.m05944 expressed protein low similarity to MMS... 30 2.0
At1g06900.1 68414.m00733 peptidase M16 family protein / insulina... 29 2.6
At4g27640.1 68417.m03973 importin beta-2 subunit family protein ... 29 3.5
At4g09360.1 68417.m01545 disease resistance protein (NBS-LRR cla... 29 4.6
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 28 6.1
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 28 6.1
At4g09960.2 68417.m01630 MADS-box protein (AGL11) 28 8.0
At4g09960.1 68417.m01629 MADS-box protein (AGL11) 28 8.0
At2g47400.1 68415.m05916 CP12 domain-containing protein contains... 28 8.0
>At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing
protein contains Pfam profile: PF03130 PBS lyase
HEAT-like repeat
Length = 1116
Score = 97.9 bits (233), Expect = 7e-21
Identities = 42/87 (48%), Positives = 64/87 (73%)
Frame = +2
Query: 5 FVKYYDRLMPCLKYIIANATTDQLKMLRGKTIECVSLIGLAVGEEKFMSDASEVMDLLLK 184
F KYYD +MP LK I+ NAT +MLR K++EC+SL+G+AVG+++F DA +VM++L+
Sbjct: 539 FQKYYDTVMPYLKTILMNATDKSKRMLRAKSMECISLVGMAVGKDRFKEDARQVMEVLMS 598
Query: 185 THTEGEQLPADDPQTSYLISAWSKFAE 265
+G Q+ ADDP TSY++ AW++ +
Sbjct: 599 --LQGSQMEADDPITSYMLQAWARLCK 623
Score = 78.2 bits (184), Expect = 6e-15
Identities = 53/182 (29%), Positives = 91/182 (50%), Gaps = 11/182 (6%)
Frame = +1
Query: 256 ICRIMGKKFSQYLPMVMEPVMRTAAMKPEVALL--DNEDLETIEGDLDWHFVTLGEQQNF 429
+C+ +G+ F Y+ +VM P++++A +KP+V + D+ED D + LG+++
Sbjct: 621 LCKCLGQDFLPYMKVVMPPLLQSAQLKPDVTITSADSEDEAEDSDDESMETIILGDKR-I 679
Query: 430 GIKTAGLEDKASACDMLVCYARELKEDLLNMLKTL*S*WCPC*SFVF---------TIM* 582
GIKT+ LE+KA+AC+ML CYA ELKE + + P F F + M
Sbjct: 680 GIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRRAAVSAMP 739
Query: 583 ELLQQNPCLISLNAPAFAARSIFKECGLT*FLNCLKPLTLSPNQEVQVELLNSLAKCIEL 762
EL++ I S K+ L+ L P+ E+ V +L ++ +C+++
Sbjct: 740 ELMRSAKLAIEKGESQGRDLSYLKQLSDYIIPAMLEALHKEPDTEICVSMLEAINECLQI 799
Query: 763 WG 768
G
Sbjct: 800 SG 801
>At5g06120.1 68418.m00680 Ran-binding protein, putative similar to
SP|Q9UIA9 Ran-binding protein 16 {Homo sapiens};
contains Pfam profile PF03810: Importin-beta N-terminal
domain
Length = 1066
Score = 34.7 bits (76), Expect = 0.070
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +1
Query: 256 ICRIMGKKFSQYLPMVMEPVMRTAAMKPEVALLDNEDLETIEGDLDW 396
+CR ++ Y+ MEP++++ + ++ DN +L IE L W
Sbjct: 444 LCRFQYERTGMYIINTMEPLLQSYTERGQLQFADNSELALIEAKLSW 490
>At5g48120.1 68418.m05944 expressed protein low similarity to MMS19
[Mus musculus] GI:14029390
Length = 1152
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/60 (25%), Positives = 30/60 (50%)
Frame = +1
Query: 343 VALLDNEDLETIEGDLDWHFVTLGEQQNFGIKTAGLEDKASACDMLVCYARELKEDLLNM 522
+ALL +D+ + D+D + QN ++ L ++ A ++L C ++ E +L M
Sbjct: 114 LALLKRKDVAGVVTDIDVQAMAKSMIQNVQVQALALHERKLAFELLECLLQQHSEAILTM 173
>At1g06900.1 68414.m00733 peptidase M16 family protein / insulinase
family protein contains Pfam domain, PF05193: Peptidase
M16 inactive domain; similar to insulin-degrading enzyme
(Insulysin, Insulinase, Insulin protease) [Mouse]
SWISS-PROT:Q9JHR7
Length = 1023
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = +1
Query: 274 KKFSQYLPMVMEPVMRTAAMKPEVALLDNEDLETIEGD 387
K+FSQ+ + P+M+T AM+ EV +D+E + ++ D
Sbjct: 184 KRFSQFF---VAPLMKTEAMEREVLAVDSEFNQALQND 218
>At4g27640.1 68417.m03973 importin beta-2 subunit family protein low
similarity to importin 4 GI:18700635 from [Homo sapiens]
Length = 1048
Score = 29.1 bits (62), Expect = 3.5
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Frame = +1
Query: 256 ICRIMGKKFSQYLPMVMEPVMRTAAMKPEVAL-LDNEDLETIE--GDLDWHFVTLGEQ-- 420
+ I+ F+QYLP VM V + + A+ +D D E + G + E
Sbjct: 573 VAEILDDTFAQYLPRVMPLVFASCNLDDGSAVDIDESDDENVNDFGGVSSDDDADDEPRV 632
Query: 421 QNFGIKTAGLEDKASACDMLVCYARELK 504
+N ++T L++KA+A L +A K
Sbjct: 633 RNISVRTGVLDEKAAATQALGLFALHTK 660
>At4g09360.1 68417.m01545 disease resistance protein (NBS-LRR
class), putative domain signature NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 853
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +3
Query: 561 FCFHDNVRTAAAESLPYLLE--CARIRGPQYIQGMWA 665
+CF +NVR A LPYL E + IRG + + +W+
Sbjct: 51 YCFIENVRIFAKNGLPYLQEKLLSEIRGKKQ-ETLWS 86
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = -1
Query: 416 SPSVTKCQSRSPSMVSKSSLSRSATSG 336
S S+++ +SRS S+ S SS SRS +SG
Sbjct: 31 SRSISRSRSRSRSLSSSSSPSRSVSSG 57
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = -1
Query: 416 SPSVTKCQSRSPSMVSKSSLSRSATSG 336
S S+++ +SRS S+ S SS SRS +SG
Sbjct: 31 SRSISRSRSRSRSLSSSSSPSRSVSSG 57
>At4g09960.2 68417.m01630 MADS-box protein (AGL11)
Length = 216
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = +3
Query: 465 CL*HVSLLCSRTKGRFAEYAEDVVKLMVPMLKFCFHDNVRTAAAESLP---YLLECARIR 635
C V+L+ T+GR EYA + ++ + K D+ T+ + + Y E A++R
Sbjct: 39 CDAEVALIVFSTRGRLYEYANNNIRSTIERYKKACSDSTNTSTVQEINAAYYQQESAKLR 98
>At4g09960.1 68417.m01629 MADS-box protein (AGL11)
Length = 230
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = +3
Query: 465 CL*HVSLLCSRTKGRFAEYAEDVVKLMVPMLKFCFHDNVRTAAAESLP---YLLECARIR 635
C V+L+ T+GR EYA + ++ + K D+ T+ + + Y E A++R
Sbjct: 39 CDAEVALIVFSTRGRLYEYANNNIRSTIERYKKACSDSTNTSTVQEINAAYYQQESAKLR 98
>At2g47400.1 68415.m05916 CP12 domain-containing protein contains
Pfam profile: PF02672 CP12 domain
Length = 124
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +2
Query: 161 EVMDLLLKTHTEGEQLPADDPQTSYLISAWSKFAE*WARNSH 286
E+ + + K+ E ++ ADDP + ++AW + E A SH
Sbjct: 52 EISEKVEKSIQEAKETCADDPVSGECVAAWDEVEELSAAASH 93
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,143,825
Number of Sequences: 28952
Number of extensions: 320911
Number of successful extensions: 884
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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