Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40293
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 114 1e-26
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|... 114 1e-26
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom... 111 6e-26
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces... 29 0.58
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||... 27 2.3
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 27 2.3
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 4.1
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|... 25 7.1
SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces po... 25 9.4
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 114 bits (274), Expect = 1e-26
Identities = 49/85 (57%), Positives = 68/85 (80%)
Frame = +3
Query: 258 NKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNII 437
NKAT ML++ EPY+ +G PNLK+VREL+YKRGF K++ QRI ++ N+I+E L K++I+
Sbjct: 128 NKATKEMLQVVEPYVTYGIPNLKTVRELLYKRGFGKVNKQRIALSDNAIIEAALGKYSIL 187
Query: 438 CVEDLIHEIFTVGEKFKYASNFLCP 512
+EDLIHEI+TVG FK A+NF+ P
Sbjct: 188 SIEDLIHEIYTVGPNFKQAANFIWP 212
Score = 111 bits (267), Expect = 8e-26
Identities = 54/86 (62%), Positives = 65/86 (75%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 RSSAIKKKREIF-KRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGI 177
+ +A +KKRE+ KRAE Y EYR ER++I L R+AR GNYYVP E KL FVIRIRGI
Sbjct: 41 KKAAQQKKRELIAKRAESYDAEYRKAEREQIELGRKARAEGNYYVPDETKLVFVIRIRGI 100
Query: 178 NQVSPKVRKVLQLFRLRQINNGVFVR 255
N + PK RK++QL RL QINNGVFV+
Sbjct: 101 NNIPPKARKIMQLLRLIQINNGVFVK 126
Score = 52.0 bits (119), Expect = 7e-08
Identities = 20/40 (50%), Positives = 32/40 (80%), Gaps = 1/40 (2%)
Frame = +2
Query: 509 PFKLNNPTGGWR-KKTIHYVDGGDFGNREDKINDLLRRMV 625
PF+L++P GGWR +K H+++GGD G R++ IN L+R+M+
Sbjct: 212 PFQLSSPLGGWRDRKFKHFIEGGDAGKRDEHINSLVRKML 251
>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 114 bits (274), Expect = 1e-26
Identities = 50/85 (58%), Positives = 67/85 (78%)
Frame = +3
Query: 258 NKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNII 437
NKA ML++ EPY+ +G PN K+VREL+YKRGF K++ QRIP++ N+I+E L K++I+
Sbjct: 127 NKAIKEMLQVVEPYVTYGIPNHKTVRELIYKRGFGKVNKQRIPLSDNAIIEAALGKYSIL 186
Query: 438 CVEDLIHEIFTVGEKFKYASNFLCP 512
VEDLIHEI+TVG FK A+NFL P
Sbjct: 187 SVEDLIHEIYTVGPNFKQAANFLWP 211
Score = 111 bits (268), Expect = 6e-26
Identities = 53/86 (61%), Positives = 66/86 (76%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 RSSAIKKKREIF-KRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGI 177
+ SA +KKRE+ KRAE Y EYR ER++I LAR+AR GNY+VP E KL FV+RIRGI
Sbjct: 40 KKSARQKKRELIAKRAEAYEAEYRAAEREQIELARKARAEGNYFVPHEPKLIFVVRIRGI 99
Query: 178 NQVSPKVRKVLQLFRLRQINNGVFVR 255
N + PK RK++QL RL QINNG+FV+
Sbjct: 100 NNIPPKARKIMQLLRLLQINNGIFVK 125
Score = 51.6 bits (118), Expect = 9e-08
Identities = 19/40 (47%), Positives = 32/40 (80%), Gaps = 1/40 (2%)
Frame = +2
Query: 509 PFKLNNPTGGWRKKTI-HYVDGGDFGNREDKINDLLRRMV 625
PFKL++P GGWR++ H+++GGD G R++ IN L+++M+
Sbjct: 211 PFKLSSPLGGWRERKFKHFIEGGDAGKRDEHINGLVQKML 250
>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 111 bits (268), Expect = 6e-26
Identities = 47/85 (55%), Positives = 65/85 (76%)
Frame = +3
Query: 258 NKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNII 437
NKA MLRI EPY+ +G PNL SVREL+YKRGF K++GQRI ++ N+++E+ L K+++I
Sbjct: 126 NKAVAQMLRIVEPYVMYGIPNLHSVRELIYKRGFGKINGQRIALSDNALIEEALGKYDVI 185
Query: 438 CVEDLIHEIFTVGEKFKYASNFLCP 512
+ED+IHEI+ VG FK + FL P
Sbjct: 186 SIEDIIHEIYNVGSHFKEVTKFLWP 210
Score = 101 bits (241), Expect = 1e-22
Identities = 45/80 (56%), Positives = 60/80 (75%)
Frame = +1
Query: 16 KKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPK 195
K ++E FKRAE ++ YR +ER+ IRL R A+N+G+ +VP E KL FVIRI G+ + PK
Sbjct: 45 KNRKETFKRAETFINNYRQRERERIRLNRSAKNKGDIFVPDETKLLFVIRIAGVKNMPPK 104
Query: 196 VRKVLQLFRLRQINNGVFVR 255
+RKVL+L RL +INN VFVR
Sbjct: 105 IRKVLRLLRLSRINNAVFVR 124
>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 224
Score = 29.1 bits (62), Expect = 0.58
Identities = 11/39 (28%), Positives = 25/39 (64%)
Frame = +1
Query: 7 SAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGN 123
+++K+ REI ++ E+ +R+K ++ ++ + A N GN
Sbjct: 151 TSLKRNREIIEKEERSSFHFRVKPKNLDKVPKLAENEGN 189
>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
1|||Manual
Length = 408
Score = 27.1 bits (57), Expect = 2.3
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = -2
Query: 491 VLELFSNSEDLMDEVLNTDNVVFMEPLLNNAVGSDWYTLSTQLGESTFVY*LTDTL*VGV 312
+L +F+ +D M L T+N + +L +A W TL G + F Y L +G+
Sbjct: 319 LLPIFNKVQDRMRYSLLTNNAIVFALVLGSAFYHSWITLG--CGNANFYYASNLILALGL 376
Query: 311 S 309
S
Sbjct: 377 S 377
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +1
Query: 106 ARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRL 225
+ N+G YY G +AFV I G+ + SP++ LQL ++
Sbjct: 1133 SENKGMYY--GLLGIAFVA-IAGVTEFSPELNAKLQLVKM 1169
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = +1
Query: 40 RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGE 141
+A Q ++ + +RL N+ N+++PGE
Sbjct: 309 KATQMTVDFLVDWAKSVRLCANRFNKSNFFIPGE 342
>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 540
Score = 25.4 bits (53), Expect = 7.1
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +3
Query: 249 CTLNKATVNMLRIAEPYI--AWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSI 404
C + N +I+ PY GYP +K + L YK KLS +PI + I
Sbjct: 27 CFFSHDFQNSTKISPPYSENVEGYPKVKIEKSLPYKYDNCKLS-ICVPIVTTCI 79
>SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 328
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 535 WLAQEDHSLCRRGRLW*PRRQDQRSSQED 621
WL ++ H+ + +LW R+DQ S +D
Sbjct: 31 WLIKKGHATSTKKQLWAVLRRDQLSFYKD 59
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,862,419
Number of Sequences: 5004
Number of extensions: 62744
Number of successful extensions: 167
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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