Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40293
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 133 1e-31
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 127 7e-30
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 100 2e-21
12_02_0398 - 18586985-18587480,18587669-18587687,18588317-185885... 28 5.6
02_03_0120 + 15463163-15465250 28 5.6
01_06_0457 - 29524544-29525962,29526518-29526606,29526841-295268... 28 7.4
11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090 27 9.7
06_03_0713 + 23811483-23811846,23811964-23812019 27 9.7
03_02_0651 + 10183050-10184167,10184350-10184974,10185023-101852... 27 9.7
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 133 bits (321), Expect = 1e-31
Identities = 57/86 (66%), Positives = 73/86 (84%)
Frame = +3
Query: 255 LNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNI 434
+NKAT+NMLR EPY+A+GYPNLKSVREL+YKRG+ KL+ QRIP+ +N ++E+ L KH+I
Sbjct: 122 VNKATINMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLQNNKVIEEGLGKHDI 181
Query: 435 ICVEDLIHEIFTVGEKFKYASNFLCP 512
IC+EDL+HEI TVG FK A+NFL P
Sbjct: 182 ICIEDLVHEIMTVGPHFKEANNFLWP 207
Score = 101 bits (241), Expect = 7e-22
Identities = 45/85 (52%), Positives = 65/85 (76%)
Frame = +1
Query: 1 RSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGIN 180
+ A++ ++ IF RA+QY +EY +E++ ++L R+AR +G +YV EAKL FV+RIRGIN
Sbjct: 37 KKKAVESRKLIFARAKQYAQEYDAQEKELVQLKREARMKGGFYVSPEAKLLFVVRIRGIN 96
Query: 181 QVSPKVRKVLQLFRLRQINNGVFVR 255
+ PK RK+LQL RLRQI NGVF++
Sbjct: 97 AMHPKTRKILQLLRLRQIFNGVFLK 121
Score = 60.5 bits (140), Expect = 1e-09
Identities = 26/38 (68%), Positives = 30/38 (78%)
Frame = +2
Query: 509 PFKLNNPTGGWRKKTIHYVDGGDFGNREDKINDLLRRM 622
PFKL P GG +KK HYV+GGD GNRED IN+L+RRM
Sbjct: 207 PFKLKAPLGGLKKKRNHYVEGGDAGNREDYINELIRRM 244
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 127 bits (307), Expect = 7e-30
Identities = 58/92 (63%), Positives = 74/92 (80%), Gaps = 6/92 (6%)
Frame = +3
Query: 255 LNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKR------ 416
+NKAT+NMLR EPY+A+GYPNLKSVREL+YKRG+ KL+ QRIP+T+N ++E+
Sbjct: 121 VNKATINMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLTNNKVIEESWCLYQG 180
Query: 417 LHKHNIICVEDLIHEIFTVGEKFKYASNFLCP 512
L KH+IIC+EDL+HEI TVG FK A+NFL P
Sbjct: 181 LGKHDIICIEDLVHEIMTVGPHFKEANNFLWP 212
Score = 99.5 bits (237), Expect = 2e-21
Identities = 44/85 (51%), Positives = 64/85 (75%)
Frame = +1
Query: 1 RSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGIN 180
+ +I+ ++ IF RA+QY +EY +E++ ++L R+AR +G +YV E KL FV+RIRGIN
Sbjct: 36 KKKSIESRKLIFSRAKQYAEEYEAQEKELVQLKREARMKGGFYVSPEEKLLFVVRIRGIN 95
Query: 181 QVSPKVRKVLQLFRLRQINNGVFVR 255
+ PK RK+LQL RLRQI NGVF++
Sbjct: 96 AMHPKTRKILQLLRLRQIFNGVFLK 120
Score = 58.4 bits (135), Expect = 5e-09
Identities = 25/38 (65%), Positives = 30/38 (78%)
Frame = +2
Query: 509 PFKLNNPTGGWRKKTIHYVDGGDFGNREDKINDLLRRM 622
PFKL P GG +KK HYV+GGD GNRE+ IN+L+RRM
Sbjct: 212 PFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRM 249
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 99.5 bits (237), Expect = 2e-21
Identities = 42/83 (50%), Positives = 62/83 (74%)
Frame = +3
Query: 264 ATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICV 443
AT+ L + EP+I +G+PNLK+V++L+YK+G L + P+TSN ++EK L ++ IIC+
Sbjct: 127 ATMKRLLVVEPFITYGFPNLKNVKDLIYKKGRGFLDKEPFPLTSNDLIEKALGEYGIICL 186
Query: 444 EDLIHEIFTVGEKFKYASNFLCP 512
EDL+HEI +VG F+ ASNFL P
Sbjct: 187 EDLVHEIASVGPHFREASNFLMP 209
Score = 51.2 bits (117), Expect = 7e-07
Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Frame = +1
Query: 37 KRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGE---AKLAFVIRIRGINQVSPKVRKV 207
KR E +V+E+R KE D +R+ + + R P E +KL F IRI G + P +R++
Sbjct: 50 KRPEDFVREFRNKELDFVRMKTRLKVRK--LPPAETLNSKLVFAIRIPGTMDLHPHMRRI 107
Query: 208 LQLFRLRQINNGVFVR 255
L+ RL Q+ GVF++
Sbjct: 108 LRKLRLTQVLTGVFLK 123
>12_02_0398 -
18586985-18587480,18587669-18587687,18588317-18588544,
18589699-18589966
Length = 336
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 134 PGKPNWHLSSESVVSTKFHRRSVKFCNCLDCAK 232
PG+ NW S +V TK R+S + N +D A+
Sbjct: 100 PGQANWFPDSNLLVDTKGRRQSRRIKNLMDEAE 132
>02_03_0120 + 15463163-15465250
Length = 695
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -3
Query: 595 VFAVTKVSP-VDIMNGLLAPTTSWIVQFEGHRKLLAYLNFSPT 470
+F+V P VD+ G+ P T+W+ R+L +L++SP+
Sbjct: 188 IFSVASAQPGVDLKAGV--PITAWVEYRAPRRRLNVWLSYSPS 228
>01_06_0457 -
29524544-29525962,29526518-29526606,29526841-29526892,
29527573-29527677,29528181-29528208,29528279-29528343,
29528808-29528880,29528932-29529113
Length = 670
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 296 LHCLGIPQLKECP*VSIQTWIRQAEW 373
LHC G+PQ+K +W+R +E+
Sbjct: 109 LHCSGLPQIKLLSRFRRSSWVRTSEY 134
>11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090
Length = 1037
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 402 IVEKRLHKHNIICVEDLIHEI 464
I K LH+H I VEDL+H +
Sbjct: 106 INHKHLHRHYSIGVEDLVHHV 126
>06_03_0713 + 23811483-23811846,23811964-23812019
Length = 139
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +3
Query: 138 GSQIGICHPNPWYQPSFTEGP*SSATV*TAPNKQWCVCTLNKATVNMLRIAEP 296
G + I H +P + S T P + A + T P K +K + R+A P
Sbjct: 23 GKFLHILHASPTGKLSVTNSPEAPAVMMTTPTKHAAAAAQSKQLLGSPRVASP 75
>03_02_0651 +
10183050-10184167,10184350-10184974,10185023-10185208,
10185325-10185660
Length = 754
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 113 IVATTTFPGKPNWHLSSESVVSTKFH 190
+V +P NWHLSS S + K H
Sbjct: 573 VVLNDLYPKCSNWHLSSTSYLQAKRH 598
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,642,529
Number of Sequences: 37544
Number of extensions: 407114
Number of successful extensions: 966
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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