Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40293
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)      141   4e-34
SB_34939| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.81 
SB_38639| Best HMM Match : Avirulence (HMM E-Value=1.5)                30   1.4  
SB_5058| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.9  
SB_16234| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_43177| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_3843| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.3  
SB_49878| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_45648| Best HMM Match : WD40 (HMM E-Value=2.4e-14)                  28   5.7  
SB_38444| Best HMM Match : TMS_TDE (HMM E-Value=0)                     28   5.7  
SB_17338| Best HMM Match : LRR_2 (HMM E-Value=0.34)                    28   5.7  
SB_4649| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.7  
SB_13893| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)                    28   7.5  
SB_56940| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_58696| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_42190| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_48124| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_3980| Best HMM Match : PAN (HMM E-Value=0.54)                       27   9.9  

>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
          Length = 245

 Score =  141 bits (342), Expect = 4e-34
 Identities = 66/86 (76%), Positives = 73/86 (84%)
 Frame = +3

Query: 255 LNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNI 434
           LNKAT NMLRI +PYIA+GYPNLKSVREL+YKRG+ K+  QR+ +T NSIVEK L KH I
Sbjct: 122 LNKATANMLRIVQPYIAFGYPNLKSVRELIYKRGYGKVDKQRVALTDNSIVEKVLGKHGI 181

Query: 435 ICVEDLIHEIFTVGEKFKYASNFLCP 512
           ICVEDLIHEIFTVGE FK ASNFL P
Sbjct: 182 ICVEDLIHEIFTVGEHFKEASNFLWP 207



 Score =  128 bits (310), Expect = 3e-30
 Identities = 60/79 (75%), Positives = 70/79 (88%)
 Frame = +1

Query: 19  KKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKV 198
           K++EIFKRAE+YVKEYR KE DE+R+ + A+  GN+YVP EA+LAFVIRIRGIN VSPKV
Sbjct: 43  KRKEIFKRAEKYVKEYRQKEVDELRMKKMAKKHGNFYVPPEARLAFVIRIRGINGVSPKV 102

Query: 199 RKVLQLFRLRQINNGVFVR 255
           RK+LQL RLRQINNGVFVR
Sbjct: 103 RKILQLLRLRQINNGVFVR 121



 Score = 64.5 bits (150), Expect = 7e-11
 Identities = 27/38 (71%), Positives = 33/38 (86%)
 Frame = +2

Query: 509 PFKLNNPTGGWRKKTIHYVDGGDFGNREDKINDLLRRM 622
           PFKL++P GG+RKKT H+V+GGD GNREDKIN L+R M
Sbjct: 207 PFKLSSPKGGFRKKTTHFVEGGDHGNREDKINGLVRVM 244


>SB_34939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 24/87 (27%), Positives = 39/87 (44%)
 Frame = +3

Query: 315 PNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEKFKYA 494
           P++ S  E   K G     G+ +P +  S  E++    NI+C+   +  + + GE+    
Sbjct: 21  PSMMSTGEQKAKGGNISCLGRSVP-SMMSTGEQKAKGGNILCLGHSVPSMMSTGEQKAKG 79

Query: 495 SNFLCPSN*TIQLVVGARRPFIMSTGE 575
            N LC         +G   P +MSTGE
Sbjct: 80  GNILC---------LGHSVPSMMSTGE 97


>SB_38639| Best HMM Match : Avirulence (HMM E-Value=1.5)
          Length = 546

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 98  PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRRSV 202
           P +HA    T  P + N H +S S  +T   RRSV
Sbjct: 318 PFRHATTTITVLPSRYNNHTASSSHATTTIQRRSV 352


>SB_5058| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 440

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 21/72 (29%), Positives = 32/72 (44%)
 Frame = -2

Query: 572 PRRHNEWSSCANHQLDCSI*RAQEITRVLELFSNSEDLMDEVLNTDNVVFMEPLLNNAVG 393
           P  HN  ++   ++L  S       T  +E+F      +DE +    V   E +LN    
Sbjct: 28  PTAHNGANNPRWNKLIASTLPKGVSTIYVEIFDERSFSVDERVAWGLVQIREDVLNGETI 87

Query: 392 SDWYTLSTQLGE 357
            DWY+LS + GE
Sbjct: 88  DDWYSLSGKQGE 99


>SB_16234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1150

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
 Frame = -2

Query: 254 RTNTPLFIWRSLNSCRTLRTFGETWLIPRIRMTNANLASPGT**LPRLRACLASLISSRS 75
           RT  PLF    L  C   R    TW  P + +  + L       +      +A L+ +RS
Sbjct: 295 RTRAPLFYSFLLTGCTARRRENVTW-FPSMALAGSILLKQRCSDMNTTACIMAVLVKTRS 353

Query: 74  LMRYSLTY--CSALLKIS 27
           + ++ L +  CS+ ++IS
Sbjct: 354 MEQFLLLFIVCSSEIQIS 371


>SB_43177| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 471

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 640 KSIYLNHPPEKIVDLVFAVTKVSPVDIMNG 551
           K IYL HP   +VD+  AV   + VDI +G
Sbjct: 13  KQIYLYHPTPNLVDVSKAVFMGAAVDIRSG 42


>SB_3843| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 72

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 1   RSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 126
           R  AI ++RE+++R E Y +    + R+  R     R R  Y
Sbjct: 16  RRRAINRRREMYRRREMYRRREMYRRREMYRRREMYRRREMY 57


>SB_49878| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 283

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/68 (26%), Positives = 29/68 (42%)
 Frame = +3

Query: 315 PNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEKFKYA 494
           P++ S  E   K G     G  +P +  S  E++    NI C    +  + + GE+    
Sbjct: 90  PSMMSTGEQKAKGGNISCPGHSVP-SIMSTGEQKAKGGNISCPGHSVPSMMSKGEQKAKG 148

Query: 495 SNFLCPSN 518
            N LCP +
Sbjct: 149 GNILCPGH 156



 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/68 (26%), Positives = 28/68 (41%)
 Frame = +3

Query: 315 PNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFTVGEKFKYA 494
           P++ S  E   K G     G  +P   N+  E++    NI C+   +  +   GE+    
Sbjct: 136 PSMMSKGEQKAKGGNILCPGHSVPSMMNT-GEQKAKGGNISCLGHSVPSMMNTGEQKAKG 194

Query: 495 SNFLCPSN 518
            N LC  N
Sbjct: 195 GNILCLGN 202


>SB_45648| Best HMM Match : WD40 (HMM E-Value=2.4e-14)
          Length = 316

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -3

Query: 517 FEGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSL 413
           F+GHRK ++Y  F  + +I  + +ST   L LW++
Sbjct: 142 FKGHRKAVSYTKFINSTEI--VSASTDSQLKLWNI 174


>SB_38444| Best HMM Match : TMS_TDE (HMM E-Value=0)
          Length = 1031

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -3

Query: 550 LLAPTTSWIVQFEGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSLFSTML 398
           ++   T+W    EG+  LL      P V I    SS  + L +W+L + +L
Sbjct: 786 IMMTLTNWYSPNEGNSSLLRLSRSWPAVWIKMGSSSACVWLYIWTLIAPVL 836


>SB_17338| Best HMM Match : LRR_2 (HMM E-Value=0.34)
          Length = 743

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = -3

Query: 487 LNFSPTVKISWMRSSTQIMLCLWSL-FSTMLLEVIGIRCPLSLANPRLYTNSRTLFKLGY 311
           L++S   KI + + +T    CLW       L ++ GI+ PL +A PR+   ++ L  LG 
Sbjct: 369 LDWSGEDKIKFFKKATG---CLWPPEILKELGDIFGIKDPLKVATPRVLRRNQKL--LGM 423

Query: 310 PQ 305
           P+
Sbjct: 424 PE 425


>SB_4649| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 475

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 20/70 (28%), Positives = 34/70 (48%)
 Frame = -3

Query: 598 LVFAVTKVSPVDIMNGLLAPTTSWIVQFEGHRKLLAYLNFSPTVKISWMRSSTQIMLCLW 419
           LVF  TK       NG  +P     ++ +GH K    L+++P V  + + +S    +CLW
Sbjct: 216 LVFDYTKHPSKPDPNGECSPD----LRLKGHTKEGYGLSWNPNVNGNLLSASDDHTICLW 271

Query: 418 SLFSTMLLEV 389
            + S +  +V
Sbjct: 272 DISSGISKDV 281


>SB_13893| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 77

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 1   RSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 126
           R   + ++REI++R E Y +    + R+  RL    R R  Y
Sbjct: 27  RRREMYRRREIYRRREMYRRREMYRRREMYRLREMYRRREMY 68


>SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)
          Length = 712

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 73  KERDEIRLARQARNRGNYYVP 135
           K RD   +AR+ R+RG YY+P
Sbjct: 483 KIRDTSSIARETRSRGPYYLP 503


>SB_56940| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1981

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 91   RLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRK 204
            RL R  + R NYY+  +  +AF + I  + +  P  R+
Sbjct: 1886 RLRRTEKRRQNYYIATQKLMAFALNIYEVLKDDPLTRR 1923


>SB_58696| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 264

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 465 FTVGEKFKYASNFLCPSN*TIQLVVG-ARRPFIMSTGETLVTAK 593
           F    K KYA NFL  S  T+  ++G   R ++ +T +TL T +
Sbjct: 68  FNKHTKLKYARNFLPTSCDTLHPLIGLGGRTYLSTTHDTLQTTQ 111


>SB_42190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 408

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 465 FTVGEKFKYASNFLCPSN*TIQLVVG-ARRPFIMSTGETLVTAK 593
           F    K KYA NFL  S  T+  ++G   R ++ +T +TL T +
Sbjct: 168 FNKHTKLKYARNFLPTSCDTLHPLIGLGGRTYLSTTHDTLQTTQ 211


>SB_48124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 344

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 480 KFKYASNFLCPSN*TIQLVVG-ARRPFIMSTGETLVTAK 593
           K KYA NFL  S  T+ L++G   R  + +T +TL T +
Sbjct: 225 KLKYARNFLPTSCDTLHLLIGLGGRIHLSTTQDTLQTTQ 263


>SB_3980| Best HMM Match : PAN (HMM E-Value=0.54)
          Length = 200

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = -2

Query: 464 DLMDEVLNTDNVVFMEP 414
           D++ E+LNTD V+F+EP
Sbjct: 181 DIICELLNTDKVLFLEP 197


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,434,105
Number of Sequences: 59808
Number of extensions: 481897
Number of successful extensions: 1158
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1153
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)