Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40293
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal pro...   127   8e-30
U41106-1|AAA82409.1|  347|Caenorhabditis elegans Hypothetical pr...    31   0.93 

>AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7 protein.
          Length = 244

 Score =  127 bits (306), Expect = 8e-30
 Identities = 56/86 (65%), Positives = 70/86 (81%)
 Frame = +3

Query: 255 LNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNI 434
           LNKAT+ +LRI EPY+AWGYPN K++ +L+YKRG+AK+ G R+PIT N+IVE+ L K NI
Sbjct: 121 LNKATLPLLRIIEPYVAWGYPNNKTIHDLLYKRGYAKVDGNRVPITDNTIVEQSLGKFNI 180

Query: 435 ICVEDLIHEIFTVGEKFKYASNFLCP 512
           IC+EDL HEI TVG  FK A+NFL P
Sbjct: 181 ICLEDLAHEIATVGPHFKEATNFLWP 206



 Score =  110 bits (264), Expect = 9e-25
 Identities = 49/80 (61%), Positives = 66/80 (82%)
 Frame = +1

Query: 16  KKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPK 195
           +KK + FKRAE+YV+EYR  +++ +RL R+A  +G++YVP E K+AFV+RIRGINQ+ PK
Sbjct: 41  EKKTQYFKRAEKYVQEYRNAQKEGLRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPK 100

Query: 196 VRKVLQLFRLRQINNGVFVR 255
            RK LQ+ RLRQINNGVFV+
Sbjct: 101 PRKALQILRLRQINNGVFVK 120



 Score = 78.6 bits (185), Expect = 4e-15
 Identities = 32/39 (82%), Positives = 37/39 (94%)
 Frame = +2

Query: 509 PFKLNNPTGGWRKKTIHYVDGGDFGNREDKINDLLRRMV 625
           PFKLNNPTGGW KKT H+V+GGDFGNRED+IN+LLR+MV
Sbjct: 206 PFKLNNPTGGWTKKTNHFVEGGDFGNREDQINNLLRKMV 244


>U41106-1|AAA82409.1|  347|Caenorhabditis elegans Hypothetical
           protein W06A11.4 protein.
          Length = 347

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = +2

Query: 17  RRRGKSSRGLNSTSRNTASRNVMKSD*PDKHAIVATTTFPGKPNWHLSSESVVSTKF 187
           ++R K SR     SR  ASR  +K     K    A +T P +PN +  S S  S ++
Sbjct: 21  KKRRKMSRKFTKKSRKRASRASIKLANEQKAKKYANSTVPMEPNVYTDSGSPFSNRY 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,813,975
Number of Sequences: 27780
Number of extensions: 354091
Number of successful extensions: 882
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)