Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40293
(648 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) 131 3e-31
At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) 131 3e-31
At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila... 130 1e-30
At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila... 130 1e-30
At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila... 130 1e-30
At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B) 128 3e-30
At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) simila... 83 2e-16
At3g18100.2 68416.m02302 myb family transcription factor (MYB4R1... 29 2.7
At3g18100.1 68416.m02301 myb family transcription factor (MYB4R1... 29 2.7
At2g34680.1 68415.m04260 leucine-rich repeat family protein cont... 29 3.5
At1g29260.1 68414.m03578 peroxisomal targeting signal type 2 rec... 28 4.7
At3g21370.1 68416.m02698 glycosyl hydrolase family 1 protein con... 28 6.1
At1g78955.1 68414.m09205 beta-amyrin synthase, putative similar ... 28 6.1
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family... 27 8.1
>At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C)
Length = 247
Score = 131 bits (317), Expect = 3e-31
Identities = 60/86 (69%), Positives = 71/86 (82%)
Frame = +3
Query: 255 LNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNI 434
+NKATVNMLR EPY+ +GYPNLKSV+EL+YKRG+ KL+ QRI +T NSIV++ L KH I
Sbjct: 124 VNKATVNMLRRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGI 183
Query: 435 ICVEDLIHEIFTVGEKFKYASNFLCP 512
ICVEDLIHEI TVG FK A+NFL P
Sbjct: 184 ICVEDLIHEIMTVGPHFKEANNFLWP 209
Score = 104 bits (250), Expect = 4e-23
Identities = 47/85 (55%), Positives = 65/85 (76%)
Frame = +1
Query: 1 RSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGIN 180
+ +++ ++ IFKRAEQY KEY K+ + IRL R+A+ +G +YV EAKL F+IRIRGIN
Sbjct: 39 KKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGIN 98
Query: 181 QVSPKVRKVLQLFRLRQINNGVFVR 255
+ PK +K+LQL RLRQI NGVF++
Sbjct: 99 AIDPKTKKILQLLRLRQIFNGVFLK 123
Score = 56.0 bits (129), Expect = 2e-08
Identities = 24/38 (63%), Positives = 30/38 (78%)
Frame = +2
Query: 509 PFKLNNPTGGWRKKTIHYVDGGDFGNREDKINDLLRRM 622
PF+L P GG +KK HYV+GGD GNRE+ IN+L+RRM
Sbjct: 209 PFQLKAPLGGLKKKRNHYVEGGDAGNRENFINELVRRM 246
>At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C)
Length = 242
Score = 131 bits (317), Expect = 3e-31
Identities = 60/86 (69%), Positives = 71/86 (82%)
Frame = +3
Query: 255 LNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNI 434
+NKATVNMLR EPY+ +GYPNLKSV+EL+YKRG+ KL+ QRI +T NSIV++ L KH I
Sbjct: 119 VNKATVNMLRRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGI 178
Query: 435 ICVEDLIHEIFTVGEKFKYASNFLCP 512
ICVEDLIHEI TVG FK A+NFL P
Sbjct: 179 ICVEDLIHEIMTVGPHFKEANNFLWP 204
Score = 104 bits (250), Expect = 4e-23
Identities = 47/85 (55%), Positives = 65/85 (76%)
Frame = +1
Query: 1 RSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGIN 180
+ +++ ++ IFKRAEQY KEY K+ + IRL R+A+ +G +YV EAKL F+IRIRGIN
Sbjct: 34 KKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGIN 93
Query: 181 QVSPKVRKVLQLFRLRQINNGVFVR 255
+ PK +K+LQL RLRQI NGVF++
Sbjct: 94 AIDPKTKKILQLLRLRQIFNGVFLK 118
Score = 56.0 bits (129), Expect = 2e-08
Identities = 24/38 (63%), Positives = 30/38 (78%)
Frame = +2
Query: 509 PFKLNNPTGGWRKKTIHYVDGGDFGNREDKINDLLRRM 622
PF+L P GG +KK HYV+GGD GNRE+ IN+L+RRM
Sbjct: 204 PFQLKAPLGGLKKKRNHYVEGGDAGNRENFINELVRRM 241
>At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 130 bits (313), Expect = 1e-30
Identities = 59/86 (68%), Positives = 70/86 (81%)
Frame = +3
Query: 255 LNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNI 434
+NKAT+NMLR EPY+ +GYPNLKSV+EL+YKRGF KL+ QR +T NSIV++ L KH I
Sbjct: 121 VNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGI 180
Query: 435 ICVEDLIHEIFTVGEKFKYASNFLCP 512
ICVEDLIHEI TVG FK A+NFL P
Sbjct: 181 ICVEDLIHEIMTVGPHFKEANNFLWP 206
Score = 102 bits (245), Expect = 2e-22
Identities = 47/80 (58%), Positives = 64/80 (80%)
Frame = +1
Query: 16 KKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPK 195
+K++ IF RA+QY KEY+ KER+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK
Sbjct: 41 EKRKLIFNRAKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPK 100
Query: 196 VRKVLQLFRLRQINNGVFVR 255
+K+LQL RLRQI NGVF++
Sbjct: 101 TKKILQLLRLRQIFNGVFLK 120
Score = 56.4 bits (130), Expect = 2e-08
Identities = 24/38 (63%), Positives = 30/38 (78%)
Frame = +2
Query: 509 PFKLNNPTGGWRKKTIHYVDGGDFGNREDKINDLLRRM 622
PF+L P GG +KK HYV+GGD GNRE+ IN+L+RRM
Sbjct: 206 PFQLKAPLGGMKKKRNHYVEGGDAGNRENFINELVRRM 243
>At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 130 bits (313), Expect = 1e-30
Identities = 59/86 (68%), Positives = 70/86 (81%)
Frame = +3
Query: 255 LNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNI 434
+NKAT+NMLR EPY+ +GYPNLKSV+EL+YKRGF KL+ QR +T NSIV++ L KH I
Sbjct: 121 VNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGI 180
Query: 435 ICVEDLIHEIFTVGEKFKYASNFLCP 512
ICVEDLIHEI TVG FK A+NFL P
Sbjct: 181 ICVEDLIHEIMTVGPHFKEANNFLWP 206
Score = 102 bits (245), Expect = 2e-22
Identities = 47/80 (58%), Positives = 64/80 (80%)
Frame = +1
Query: 16 KKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPK 195
+K++ IF RA+QY KEY+ KER+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK
Sbjct: 41 EKRKLIFNRAKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPK 100
Query: 196 VRKVLQLFRLRQINNGVFVR 255
+K+LQL RLRQI NGVF++
Sbjct: 101 TKKILQLLRLRQIFNGVFLK 120
Score = 56.4 bits (130), Expect = 2e-08
Identities = 24/38 (63%), Positives = 30/38 (78%)
Frame = +2
Query: 509 PFKLNNPTGGWRKKTIHYVDGGDFGNREDKINDLLRRM 622
PF+L P GG +KK HYV+GGD GNRE+ IN+L+RRM
Sbjct: 206 PFQLKAPLGGMKKKRNHYVEGGDAGNRENFINELVRRM 243
>At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 130 bits (313), Expect = 1e-30
Identities = 59/86 (68%), Positives = 70/86 (81%)
Frame = +3
Query: 255 LNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNI 434
+NKAT+NMLR EPY+ +GYPNLKSV+EL+YKRGF KL+ QR +T NSIV++ L KH I
Sbjct: 121 VNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGI 180
Query: 435 ICVEDLIHEIFTVGEKFKYASNFLCP 512
ICVEDLIHEI TVG FK A+NFL P
Sbjct: 181 ICVEDLIHEIMTVGPHFKEANNFLWP 206
Score = 102 bits (245), Expect = 2e-22
Identities = 47/80 (58%), Positives = 64/80 (80%)
Frame = +1
Query: 16 KKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPK 195
+K++ IF RA+QY KEY+ KER+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK
Sbjct: 41 EKRKLIFNRAKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPK 100
Query: 196 VRKVLQLFRLRQINNGVFVR 255
+K+LQL RLRQI NGVF++
Sbjct: 101 TKKILQLLRLRQIFNGVFLK 120
Score = 56.4 bits (130), Expect = 2e-08
Identities = 24/38 (63%), Positives = 30/38 (78%)
Frame = +2
Query: 509 PFKLNNPTGGWRKKTIHYVDGGDFGNREDKINDLLRRM 622
PF+L P GG +KK HYV+GGD GNRE+ IN+L+RRM
Sbjct: 206 PFQLKAPLGGMKKKRNHYVEGGDAGNRENFINELVRRM 243
>At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)
Length = 242
Score = 128 bits (309), Expect = 3e-30
Identities = 58/86 (67%), Positives = 70/86 (81%)
Frame = +3
Query: 255 LNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNI 434
+NKAT+NMLR EPY+ +G+PNLKSV+EL+YKRG+ KL+ QRI +T NSIVE+ L KH I
Sbjct: 119 VNKATMNMLRRVEPYVTYGFPNLKSVKELIYKRGYGKLNHQRIALTDNSIVEQALGKHGI 178
Query: 435 ICVEDLIHEIFTVGEKFKYASNFLCP 512
IC EDLIHEI TVG FK A+NFL P
Sbjct: 179 ICTEDLIHEILTVGPHFKEANNFLWP 204
Score = 101 bits (242), Expect = 4e-22
Identities = 47/80 (58%), Positives = 62/80 (77%)
Frame = +1
Query: 16 KKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPK 195
+ ++ IFKRAEQY KEY KE++ I L R+A+ +G +YV EAKL F+IRIRGIN + PK
Sbjct: 39 ENRKLIFKRAEQYSKEYAEKEKELISLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPK 98
Query: 196 VRKVLQLFRLRQINNGVFVR 255
+K+LQL RLRQI NGVF++
Sbjct: 99 TKKILQLLRLRQIFNGVFLK 118
Score = 56.4 bits (130), Expect = 2e-08
Identities = 24/38 (63%), Positives = 30/38 (78%)
Frame = +2
Query: 509 PFKLNNPTGGWRKKTIHYVDGGDFGNREDKINDLLRRM 622
PF+L P GG +KK HYV+GGD GNRE+ IN+L+RRM
Sbjct: 204 PFQLKAPLGGLKKKRNHYVEGGDAGNRENFINELIRRM 241
>At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) similar
to ribosomal protein L7 GB:AAA03081 GI:307388 from [Homo
sapiens]
Length = 247
Score = 83.0 bits (196), Expect = 2e-16
Identities = 33/74 (44%), Positives = 53/74 (71%)
Frame = +3
Query: 291 EPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEIFT 470
+PY+ +GYPN KSV++L+YK+G + G +P+T N+I+E+ L +H I+ +EDL++EI
Sbjct: 135 QPYVTYGYPNDKSVKDLIYKKGCTIIEGNPVPLTDNNIIEQALGEHKILGIEDLVNEIAR 194
Query: 471 VGEKFKYASNFLCP 512
VG+ F+ FL P
Sbjct: 195 VGDHFREVMRFLGP 208
Score = 61.3 bits (142), Expect = 5e-10
Identities = 29/80 (36%), Positives = 48/80 (60%)
Frame = +1
Query: 16 KKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPK 195
KKK KR E +V E+R KE D IR+ ++ + + P ++ L F+IRI+G N + PK
Sbjct: 43 KKKVSDIKRPEDFVHEFRAKEVDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQGKNDMHPK 102
Query: 196 VRKVLQLFRLRQINNGVFVR 255
+++L +L+ + GVF +
Sbjct: 103 TKRILNNLQLKSVFTGVFAK 122
Score = 44.0 bits (99), Expect = 9e-05
Identities = 22/40 (55%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Frame = +2
Query: 509 PFKLNNPTGG--WRKKTIHYVDGGDFGNREDKINDLLRRM 622
P KLN P RKK + + +GGD GNREDKINDL+ +M
Sbjct: 208 PLKLNKPVADVLHRKKQV-FSEGGDTGNREDKINDLISKM 246
>At3g18100.2 68416.m02302 myb family transcription factor (MYB4R1)
contains Pfam profile: PF00249 Myb-like DNA-binding
domain
Length = 634
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +2
Query: 101 DKHAIVATTTFPGKPNWHLSSESVVSTKFHRRSVKFCNCLD 223
DK VA T F G NWH S+ V + ++ NCLD
Sbjct: 341 DKRVKVAVTLF-GSQNWHKISQFVPGRTQTQCRERWLNCLD 380
>At3g18100.1 68416.m02301 myb family transcription factor (MYB4R1)
contains Pfam profile: PF00249 Myb-like DNA-binding
domain
Length = 847
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +2
Query: 101 DKHAIVATTTFPGKPNWHLSSESVVSTKFHRRSVKFCNCLD 223
DK VA T F G NWH S+ V + ++ NCLD
Sbjct: 554 DKRVKVAVTLF-GSQNWHKISQFVPGRTQTQCRERWLNCLD 593
>At2g34680.1 68415.m04260 leucine-rich repeat family protein
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; identical to cDNA hypothetical protein
(AIR9) mRNA, partial cds GI:3695020
Length = 1661
Score = 28.7 bits (61), Expect = 3.5
Identities = 22/81 (27%), Positives = 38/81 (46%)
Frame = -2
Query: 269 SSLIQRTNTPLFIWRSLNSCRTLRTFGETWLIPRIRMTNANLASPGT**LPRLRACLASL 90
SSL TP+ I R+ T G + ++P+ T A+ P LP LR S
Sbjct: 67 SSLRVSGTTPVTIRRNSTGGVTENLAGTSKVLPKQVSTTASRTDPVRRSLPELRKSSVSS 126
Query: 89 ISSRSLMRYSLTYCSALLKIS 27
+S++++ + SL+ + +S
Sbjct: 127 LSAKTVSKPSLSESKKSVPVS 147
>At1g29260.1 68414.m03578 peroxisomal targeting signal type 2
receptor (PEX7) identical to peroxisomal targeting
signal type 2 receptor (Pex7p) (GI:9502414) [Arabidopsis
thaliana]; WD-40 repeat protein family member; contains
6 WD-40 repeats (PF00400); similar to peroxismal
targeting signal 2 receptor (PTS2R) (Peroxin-7)
(PEX7)(SP:O00628) [Homo sapiens]
Length = 317
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/52 (26%), Positives = 30/52 (57%)
Frame = -3
Query: 568 VDIMNGLLAPTTSWIVQFEGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSL 413
V I + L P ++ I F+ H + + ++++PT + S++ SS + LW++
Sbjct: 85 VKIYDTALPPPSNPIRSFQEHAREVQSVDYNPTRRDSFLTSSWDDTVKLWAM 136
>At3g21370.1 68416.m02698 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to beta-glucosidase (GI:757740) [Brassica
napus]; similar to beta-glucosidase GB:AAB64244 from
[Arabidopsis thaliana], (Plant Mol. Biol. 34 (1), 57-68
(1997))
Length = 527
Score = 27.9 bits (59), Expect = 6.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 129 RSRGSQIGICHPNPWYQPSFTEG 197
+ +G +IGI H W++P EG
Sbjct: 263 KCKGGKIGIAHSPAWFEPEDVEG 285
>At1g78955.1 68414.m09205 beta-amyrin synthase, putative similar to
beta-Amyrin Synthase GI:3688600 from [Panax ginseng] and
GI:8918271 from [Pisum sativum]
Length = 769
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +3
Query: 228 PNKQWCVCTLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQR 380
P K WC C L ++ L + ++ P + +RE +Y + +AK++ R
Sbjct: 254 PAKMWCYCRLVYMPMSYL-YGKRFVGPISPLILQLREEIYLQPYAKINWNR 303
>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 1696
Score = 27.5 bits (58), Expect = 8.1
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = +2
Query: 41 GLNSTSRNTASRNVMKSD*PDKHAIVATTTFPGKPNWHLSSESVVSTKFHR 193
G + T R+ +R + SD K+ V+ T GK HLS E VS F R
Sbjct: 407 GASVTPRSIKARRALLSD---KNEKVSVTERNGKLGTHLSDEISVSEGFRR 454
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,027,829
Number of Sequences: 28952
Number of extensions: 330854
Number of successful extensions: 880
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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