Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40292
         (465 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac...    64   1e-11
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S...    64   1e-11
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac...    26   3.3  
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ...    25   4.3  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    25   5.7  
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    24   9.9  
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   9.9  

>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 63.7 bits (148), Expect = 1e-11
 Identities = 25/34 (73%), Positives = 29/34 (85%)
 Frame = +2

Query: 149 TKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCA 250
           TKGT SFG R NK+HT+CRRCG+ S+HIQKS CA
Sbjct: 2   TKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCA 35



 Score = 56.0 bits (129), Expect = 3e-09
 Identities = 25/47 (53%), Positives = 29/47 (61%)
 Frame = +1

Query: 256 GYPAAKLRSYHWSVKAXXXXXXXXXXMRHLKIVRRRFRNGFKEGKPT 396
           GYPAAK RSY+W  KA          M +LK V R F+NGF+ GKPT
Sbjct: 38  GYPAAKTRSYNWGAKAKRRRTTGTGRMSYLKKVHRSFKNGFRAGKPT 84


>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 91

 Score = 63.7 bits (148), Expect = 1e-11
 Identities = 25/34 (73%), Positives = 29/34 (85%)
 Frame = +2

Query: 149 TKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCA 250
           TKGT SFG R NK+HT+CRRCG+ S+HIQKS CA
Sbjct: 2   TKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCA 35



 Score = 54.8 bits (126), Expect = 6e-09
 Identities = 26/54 (48%), Positives = 30/54 (55%)
 Frame = +1

Query: 256 GYPAAKLRSYHWSVKAXXXXXXXXXXMRHLKIVRRRFRNGFKEGKPTPPKKAVA 417
           GYPAAK RSY+W  KA          M +LK V R F+NGF+ GKP     A A
Sbjct: 38  GYPAAKTRSYNWGAKAKRRRTTGTGRMSYLKKVHRSFKNGFRSGKPAAAVAASA 91


>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 340

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
 Frame = +3

Query: 231 FKNQNAPN--WISCSKITILP 287
           F N+  PN  W+ C K+TI P
Sbjct: 277 FLNEPTPNKFWLECDKVTIQP 297


>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -2

Query: 353 TIFK*RMRPVPVVFLRLAFTDQW*DRNFAAGYP 255
           T+F   +  +PV+ +   FT+ W   N A  +P
Sbjct: 197 TMFYNNLLSIPVLVICTLFTEDWSAENIAQNFP 229


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 7/30 (23%), Positives = 17/30 (56%)
 Frame = +3

Query: 234 KNQNAPNWISCSKITILPLVSEG*AQEDYW 323
           ++ + P W+SC+++ +L    +    +D W
Sbjct: 267 EDYDTPTWLSCARLPLLKAFKDVIGLKDVW 296


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +3

Query: 90  LNICEINSAEHILTCNVNFRRRVPQASVSAEIRPIRYAEDVVD 218
           LN+      ++ L C  +F  R+P+      ++ IRY  +  D
Sbjct: 358 LNLTFDGFQDYCLMCGTDFTSRIPKIGPVRALKLIRYYGNAFD 400


>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = -1

Query: 453 IFIYLAHIDS*RSYSLLGRRWFPFFKT---ITEAP 358
           IFIYL+  +    Y +L  R F  +KT   IT+ P
Sbjct: 17  IFIYLSVANKIMFYCILNERAFKHYKTYRRITDCP 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,811,278
Number of Sequences: 5004
Number of extensions: 35042
Number of successful extensions: 65
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)