Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40292
         (465 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0195 + 1612938-1613003,1613026-1613161,1614624-1614725,161...    64   4e-11
02_05_1204 + 34936696-34936698,34936809-34936944,34937794-349378...    64   4e-11
02_01_0089 + 633642-633644,633728-633863,635356-635457,635565-63...    64   4e-11
05_03_0603 - 16117695-16118396,16118679-16118939,16120100-161201...    30   1.1  
09_04_0019 - 13833358-13833526,13834207-13834390,13834977-13835292     28   3.2  
11_06_0288 - 21962546-21962977,21963041-21963211,21963411-21963788     27   7.4  

>08_01_0195 +
           1612938-1613003,1613026-1613161,1614624-1614725,
           1614833-1614876
          Length = 115

 Score = 64.5 bits (150), Expect = 4e-11
 Identities = 26/33 (78%), Positives = 29/33 (87%)
 Frame = +2

Query: 152 KGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCA 250
           KGT SFGKRRNKTHTLC RCGR S+H+QKS C+
Sbjct: 24  KGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCS 56



 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 24/54 (44%), Positives = 34/54 (62%)
 Frame = +1

Query: 256 GYPAAKLRSYHWSVKAXXXXXXXXXXMRHLKIVRRRFRNGFKEGKPTPPKKAVA 417
           GYPAA++R Y+WSVKA          MR+++ V RRF++ F+EG    P+K  A
Sbjct: 59  GYPAARIRKYNWSVKAIRRKTTGTGRMRYMRHVPRRFKSNFREGTEATPRKRAA 112


>02_05_1204 +
           34936696-34936698,34936809-34936944,34937794-34937895,
           34938153-34938199
          Length = 95

 Score = 64.5 bits (150), Expect = 4e-11
 Identities = 26/33 (78%), Positives = 29/33 (87%)
 Frame = +2

Query: 152 KGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCA 250
           KGT SFGKRRNKTHTLC RCGR S+H+QKS C+
Sbjct: 3   KGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCS 35



 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 24/56 (42%), Positives = 36/56 (64%)
 Frame = +1

Query: 256 GYPAAKLRSYHWSVKAXXXXXXXXXXMRHLKIVRRRFRNGFKEGKPTPPKKAVASS 423
           GYPAA++R Y+WSVKA          MR+L+ V +RF++ F+EG    P+K  A++
Sbjct: 38  GYPAARIRKYNWSVKAIRRKTTGTGRMRYLRHVPKRFKSNFREGTEAAPRKKGAAA 93


>02_01_0089 +
           633642-633644,633728-633863,635356-635457,635565-635608
          Length = 94

 Score = 64.5 bits (150), Expect = 4e-11
 Identities = 26/33 (78%), Positives = 29/33 (87%)
 Frame = +2

Query: 152 KGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCA 250
           KGT SFGKRRNKTHTLC RCGR S+H+QKS C+
Sbjct: 3   KGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCS 35



 Score = 57.2 bits (132), Expect = 6e-09
 Identities = 24/56 (42%), Positives = 36/56 (64%)
 Frame = +1

Query: 256 GYPAAKLRSYHWSVKAXXXXXXXXXXMRHLKIVRRRFRNGFKEGKPTPPKKAVASS 423
           GYPAA++R Y+WSVKA          MR+++ V RRF++ F+EG    P+K  A++
Sbjct: 38  GYPAARIRKYNWSVKAIRRKTTGTGRMRYMRHVPRRFKSNFREGTEATPRKRAAAA 93


>05_03_0603 - 16117695-16118396,16118679-16118939,16120100-16120144,
            16120362-16120453,16120568-16120706,16121027-16121063,
            16121147-16121434,16122000-16122074,16122505-16122581,
            16123092-16123256,16123387-16123543,16124558-16124733,
            16124828-16124940,16125398-16125428,16126487-16126605,
            16126696-16126789,16127384-16127458,16127548-16127666,
            16127751-16127907,16129252-16129398
          Length = 1022

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/58 (25%), Positives = 32/58 (55%)
 Frame = +3

Query: 93   NICEINSAEHILTCNVNFRRRVPQASVSAEIRPIRYAEDVVDRHITFKNQNAPNWISC 266
            N+  + + +  + C ++  R V Q+ +S ++RP   A D++  ++   N++ P  ISC
Sbjct: 899  NVPRLQAIQRSVQCMIDTLRSV-QSWLSDQMRPEEQALDILLSYLQGGNEDGPGQISC 955


>09_04_0019 - 13833358-13833526,13834207-13834390,13834977-13835292
          Length = 222

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 158 TSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQLDILQQNYDPTT 289
           T +FG    K HT CR CG +S++  +S    + +     DP T
Sbjct: 26  TYTFGTHTAK-HTFCRVCGITSFYTPRSNPDGVAVTAACVDPGT 68


>11_06_0288 - 21962546-21962977,21963041-21963211,21963411-21963788
          Length = 326

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +3

Query: 258 ISCSKITILPLVSEG*AQEDYWNW--PHASFEDC 353
           I+   +T +  +S   + +D W W  PH  +EDC
Sbjct: 116 IALPPVTTIEQLSIARSGDDKWTWLPPHKDYEDC 149


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,339,397
Number of Sequences: 37544
Number of extensions: 213826
Number of successful extensions: 448
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)