Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40292
         (465 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43242| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   8e-05
SB_5207| Best HMM Match : TUDOR (HMM E-Value=3.1)                      29   1.4  
SB_5031| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.4  
SB_19925| Best HMM Match : TUDOR (HMM E-Value=2)                       28   3.3  
SB_30032| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-06)                 28   4.4  

>SB_43242| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 54

 Score = 43.6 bits (98), Expect = 8e-05
 Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
 Frame = +1

Query: 286 HWSVKAXXXXXXXXXXMRHLKIVRRRFRNGFKEG-KPTPPKKAVASS 423
           +WS+KA          MRHLK+V RRF+NGF+EG +    KK VA++
Sbjct: 2   NWSMKAKRRTTTGTGRMRHLKLVYRRFQNGFQEGTQAKSQKKNVAAA 48


>SB_5207| Best HMM Match : TUDOR (HMM E-Value=3.1)
          Length = 364

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 10/41 (24%), Positives = 22/41 (53%)
 Frame = +3

Query: 222 HITFKNQNAPNWISCSKITILPLVSEG*AQEDYWNWPHASF 344
           H+T+ + +   W++C K+ +LP+ ++      Y  W +  F
Sbjct: 126 HVTYDDGDK-GWVNCDKVRLLPMRADEVGARVYARWTNGQF 165


>SB_5031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 525

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 10/41 (24%), Positives = 22/41 (53%)
 Frame = +3

Query: 222 HITFKNQNAPNWISCSKITILPLVSEG*AQEDYWNWPHASF 344
           H+T+ + +   W++C K+ +LP+ ++      Y  W +  F
Sbjct: 287 HVTYDDGDK-GWVNCDKVRLLPMRADEVGARVYARWTNGQF 326


>SB_19925| Best HMM Match : TUDOR (HMM E-Value=2)
          Length = 263

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = +3

Query: 222 HITFKNQNAPNWISCSKITILPLVSEG*AQEDYWNWPHASF 344
           H+T+ + +   W++C K+ +LP+  +      Y  W +  F
Sbjct: 83  HVTYDDGDK-GWVNCDKVRLLPMRVDEVGARVYARWTNGQF 122


>SB_30032| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-06)
          Length = 819

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 230 CDMTIYHIFCITYGSYFGA 174
           CD +IYHI+ + Y  ++GA
Sbjct: 355 CDSSIYHIYRLKYAVHYGA 373


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,048,019
Number of Sequences: 59808
Number of extensions: 241004
Number of successful extensions: 789
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 957531822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)