Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40292
         (465 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83128-1|CAB05635.1|   92|Caenorhabditis elegans Hypothetical pr...    61   3e-10
Z77131-1|CAB00854.1|   91|Caenorhabditis elegans Hypothetical pr...    61   3e-10

>Z83128-1|CAB05635.1|   92|Caenorhabditis elegans Hypothetical
           protein W01D2.1 protein.
          Length = 92

 Score = 61.3 bits (142), Expect = 3e-10
 Identities = 23/34 (67%), Positives = 30/34 (88%)
 Frame = +2

Query: 149 TKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCA 250
           TKGT +FGK+  K+HTLC+RCG+SS+HIQK +CA
Sbjct: 2   TKGTQAFGKKHVKSHTLCKRCGKSSFHIQKKRCA 35



 Score = 50.8 bits (116), Expect = 5e-07
 Identities = 22/50 (44%), Positives = 28/50 (56%)
 Frame = +1

Query: 256 GYPAAKLRSYHWSVKAXXXXXXXXXXMRHLKIVRRRFRNGFKEGKPTPPK 405
           GYP AK R+Y+W  K+           RHL+ V  RFRNGF+EG    P+
Sbjct: 38  GYPDAKKRTYNWGAKSIRRRTTGTGRTRHLRDVNARFRNGFREGTTPKPR 87


>Z77131-1|CAB00854.1|   91|Caenorhabditis elegans Hypothetical
           protein C54C6.1 protein.
          Length = 91

 Score = 61.3 bits (142), Expect = 3e-10
 Identities = 23/34 (67%), Positives = 30/34 (88%)
 Frame = +2

Query: 149 TKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCA 250
           TKGT +FGK+  K+HTLC+RCG+SS+HIQK +CA
Sbjct: 2   TKGTQAFGKKHVKSHTLCKRCGKSSFHIQKKRCA 35



 Score = 44.4 bits (100), Expect = 4e-05
 Identities = 20/48 (41%), Positives = 25/48 (52%)
 Frame = +1

Query: 256 GYPAAKLRSYHWSVKAXXXXXXXXXXMRHLKIVRRRFRNGFKEGKPTP 399
           GY  AK R+Y+W  K+           RHL+ V  RFRNGF+   P P
Sbjct: 38  GYQDAKKRTYNWGAKSIRRRTTGTGRTRHLRDVNARFRNGFRGTTPKP 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,982,932
Number of Sequences: 27780
Number of extensions: 194374
Number of successful extensions: 370
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)