Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40292
         (465 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g52300.1 68414.m05901 60S ribosomal protein L37 (RPL37B) simi...    67   6e-12
At3g16080.1 68416.m02032 60S ribosomal protein L37 (RPL37C) simi...    65   3e-11
At1g15250.1 68414.m01825 60S ribosomal protein L37 (RPL37A) almo...    65   3e-11
At4g08330.1 68417.m01375 expressed protein                             33   0.072
At3g49650.1 68416.m05426 kinesin motor protein-related several k...    31   0.51 
At4g27590.1 68417.m03963 copper-binding protein-related low simi...    28   2.7  
At1g03670.1 68414.m00346 ankyrin repeat family protein contains ...    28   3.6  
At5g16940.1 68418.m01985 expressed protein contains Pfam profile...    27   4.7  
At1g54590.1 68414.m06226 splicing factor Prp18 family protein co...    27   6.2  

>At1g52300.1 68414.m05901 60S ribosomal protein L37 (RPL37B) similar
           to SP:Q43292 from [Arabidopsis thaliana]
          Length = 95

 Score = 66.9 bits (156), Expect = 6e-12
 Identities = 27/34 (79%), Positives = 31/34 (91%)
 Frame = +2

Query: 149 TKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCA 250
           TKGT SFGKRRNK+HTLC RCGR S+HIQKS+C+
Sbjct: 2   TKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCS 35



 Score = 56.8 bits (131), Expect = 7e-09
 Identities = 29/64 (45%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
 Frame = +1

Query: 235 KIKMRPIGYPAAKLRSYHWSVKAXXXXXXXXXXMRHLKIVRRRFRNGFKEGKPTPPK-KA 411
           K +     YPAA+ R+Y+WSVKA          MR+L+ V RRF+ GF+EG    P+ K 
Sbjct: 31  KSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTGFREGTEAKPRNKG 90

Query: 412 VASS 423
           VASS
Sbjct: 91  VASS 94


>At3g16080.1 68416.m02032 60S ribosomal protein L37 (RPL37C) similar
           to ribosomal protein L37 GB:BAA04888 from [Homo sapiens]
          Length = 95

 Score = 64.9 bits (151), Expect = 3e-11
 Identities = 26/33 (78%), Positives = 30/33 (90%)
 Frame = +2

Query: 152 KGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCA 250
           KGT SFGKRRNK+HTLC RCGR S+HIQKS+C+
Sbjct: 3   KGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCS 35



 Score = 56.0 bits (129), Expect = 1e-08
 Identities = 29/64 (45%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
 Frame = +1

Query: 235 KIKMRPIGYPAAKLRSYHWSVKAXXXXXXXXXXMRHLKIVRRRFRNGFKEGKPTPPK-KA 411
           K +     YPAA+ R+Y+WSVKA          MR+L+ V RRF+ GF+EG    P+ KA
Sbjct: 31  KSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTGFREGTEAKPRSKA 90

Query: 412 VASS 423
            ASS
Sbjct: 91  SASS 94


>At1g15250.1 68414.m01825 60S ribosomal protein L37 (RPL37A) almost
           identical to GB:Q43292
          Length = 95

 Score = 64.9 bits (151), Expect = 3e-11
 Identities = 26/33 (78%), Positives = 30/33 (90%)
 Frame = +2

Query: 152 KGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCA 250
           KGT SFGKRRNK+HTLC RCGR S+HIQKS+C+
Sbjct: 3   KGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCS 35



 Score = 54.8 bits (126), Expect = 3e-08
 Identities = 29/64 (45%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
 Frame = +1

Query: 235 KIKMRPIGYPAAKLRSYHWSVKAXXXXXXXXXXMRHLKIVRRRFRNGFKEG-KPTPPKKA 411
           K +     YPAA+ R+Y+WSVKA          MR+L+ V RRF+  F+EG + TP  KA
Sbjct: 31  KSRCSACAYPAARKRTYNWSVKAIRRKTTGTGRMRYLRNVPRRFKTCFREGTQATPRNKA 90

Query: 412 VASS 423
            ASS
Sbjct: 91  AASS 94


>At4g08330.1 68417.m01375 expressed protein 
          Length = 164

 Score = 33.5 bits (73), Expect = 0.072
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +2

Query: 164 SFGKRRNKTHTLCRRCGRSSYHIQKSKCAQLDILQQNYDPTT 289
           S+G  R++T  LCR+C     +  + K  +  ++ QN DPT+
Sbjct: 98  SWGLFRHRTKLLCRKCNNYIGNASQEKAPEYALVTQNSDPTS 139


>At3g49650.1 68416.m05426 kinesin motor protein-related several
           kinesin-like proteins
          Length = 813

 Score = 30.7 bits (66), Expect = 0.51
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +2

Query: 119 AYPNLQCQFQT-KGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQLDILQQNYDPTTG 292
           +Y    C FQ+ +  SS G++   T TLCR    SSY+  + +      L++++D   G
Sbjct: 605 SYSKSSCTFQSYQDPSSKGQQWAPTPTLCREEHHSSYYFMRQEPPAFVNLRKSHDGWVG 663


>At4g27590.1 68417.m03963 copper-binding protein-related low
           similarity to copper homeostasis factor gi:3168840 from
           Arabidopsis thaliana; contains Pfam profile PF00403:
           Heavy-metal-associated domain
          Length = 156

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 10/47 (21%), Positives = 23/47 (48%)
 Frame = +3

Query: 186 RPIRYAEDVVDRHITFKNQNAPNWISCSKITILPLVSEG*AQEDYWN 326
           R + + + +    + + NQ    W  C+K+ +L +V +   +  +WN
Sbjct: 35  RALSHLKGIYSVKVDYYNQKVTVWGICNKLDVLAMVKKKRKEARFWN 81


>At1g03670.1 68414.m00346 ankyrin repeat family protein contains
           ankyrin repeats, Pfam:PF00023
          Length = 616

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 203 CITYGSYFGAYRSLRYPSSEIDIA 132
           C++YG+  G Y  +RY  +E D A
Sbjct: 252 CLSYGASMGCYEGIRYILAEFDKA 275


>At5g16940.1 68418.m01985 expressed protein contains Pfam profile
           PF04828: Protein of unknown function (DUF636)
          Length = 135

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 158 TSSFGKRRNKTHTLCRRCGRSSYHIQKS 241
           T +FG    K HT C+ CG +S++I +S
Sbjct: 64  TYTFGTHTAK-HTFCKVCGITSFYIPRS 90


>At1g54590.1 68414.m06226 splicing factor Prp18 family protein
           contains Pfam profile: PF02840 Prp18 domain
          Length = 256

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +2

Query: 131 LQCQFQTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQLDILQ 268
           L+    T+  ++ GK+   T   C R     +H+ ++KC   DI Q
Sbjct: 79  LEAMENTERRTAIGKQMLATFNQCARYLTPLFHLCRNKCLPADIRQ 124


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,238,564
Number of Sequences: 28952
Number of extensions: 175926
Number of successful extensions: 339
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 782033640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)