Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40291
         (606 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44616| Best HMM Match : rve (HMM E-Value=0.012)                     29   2.9  
SB_38226| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_32209| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                28   6.7  

>SB_44616| Best HMM Match : rve (HMM E-Value=0.012)
          Length = 1189

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 168 GGRPHSPPGVFIFYCLDGWRS 106
           GGR H P  VF+FY  +G+R+
Sbjct: 420 GGRNHGPGDVFVFYPGEGYRN 440


>SB_38226| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 56

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = -3

Query: 577 HPNKRSPGKYRMMKITLFFDLSKVSHSQ 494
           +P+KR+ GKYR+ +  L FDLS V   Q
Sbjct: 29  NPDKRA-GKYRISEYILVFDLSTVQRRQ 55


>SB_32209| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 1240

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 407 NNNNRYIKTTYFEVVTMKCVXLCFFKPKCLRVRN 508
           + N RY+ TT+FE    +    CF +P    V N
Sbjct: 249 DGNTRYLATTHFEPTDARAAFPCFDEPALKAVFN 282


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,563,892
Number of Sequences: 59808
Number of extensions: 345504
Number of successful extensions: 901
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)