Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40291
         (606 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g30420.1 68414.m03718 ATP-binding cassette transport protein,...    29   1.8  
At3g13650.1 68416.m01719 disease resistance response  protein-re...    28   5.5  

>At1g30420.1 68414.m03718 ATP-binding cassette transport protein,
            putative contains Pfam profiles PF00005: ABC transporter,
            PF00664: ABC transporter transmembrane region
          Length = 1488

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -3

Query: 592  YTNVSHPNKRSPGKYRMMKITLFFDLSKVSHSQTFWLKKTQXHTFHCYH 446
            +T+ S P   SPG Y ++   L F    V+ + +FWL  +  H     H
Sbjct: 938  WTDQSTPKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLH 986


>At3g13650.1 68416.m01719 disease resistance response
           protein-related/ dirigent  protein-related similar to
           dirigent protein [Thuja plicata] gi|6694699|gb|AAF25360;
           similar to pathogenesis-related protein [Pisum sativum]
           gi|4585273|gb|AAD25355
          Length = 186

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 516 YQKFLTLKHFGLKKHNXTHFIV 451
           + K +  KHFGL+K   THF V
Sbjct: 27  FAKTIDKKHFGLRKEKLTHFRV 48


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,288,227
Number of Sequences: 28952
Number of extensions: 233640
Number of successful extensions: 397
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)