Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40289
         (703 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    25   0.60 
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    25   0.60 
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    25   0.60 
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    25   0.60 
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    25   0.60 
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    22   5.6  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 22  ILLIYCLSAYEAY*HSAIILQLMLQGFS 105
           +LLI   ++Y AY       ++M+QGFS
Sbjct: 380 VLLINIFASYFAYIFGKFACKIMIQGFS 407


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 22  ILLIYCLSAYEAY*HSAIILQLMLQGFS 105
           +LLI   ++Y AY       ++M+QGFS
Sbjct: 380 VLLINIFASYFAYIFGKFACKIMIQGFS 407


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 22  ILLIYCLSAYEAY*HSAIILQLMLQGFS 105
           +LLI   ++Y AY       ++M+QGFS
Sbjct: 380 VLLINIFASYFAYIFGKFACKIMIQGFS 407


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 22  ILLIYCLSAYEAY*HSAIILQLMLQGFS 105
           +LLI   ++Y AY       ++M+QGFS
Sbjct: 380 VLLINIFASYFAYIFGKFACKIMIQGFS 407


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 8/25 (32%), Positives = 18/25 (72%)
 Frame = +3

Query: 570 NLYEKVNQDLVNCCRKLHLQKIQIG 644
           N+Y++V  +LVN  +++ + K ++G
Sbjct: 290 NIYDRVLSELVNKMKEMKMDKTELG 314


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 576 YEKVNQDLVNCCRK 617
           YE   Q++ NCC K
Sbjct: 97  YELSKQEIFNCCSK 110


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,742
Number of Sequences: 336
Number of extensions: 3218
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18530690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)