Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40289
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb...    31   0.21 
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    27   2.6  
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc...    25   7.9  

>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 23/77 (29%), Positives = 37/77 (48%)
 Frame = -1

Query: 550 VKLLYYVSHNFIPLTSNSCILIYMYIN*ISETAPTIFIKFCIQGISGAINRSSYDLFSEN 371
           ++LL Y+ +N IP+  N   L  M IN      PT+ ++FC      +   SS    +EN
Sbjct: 272 LELLVYLKNNNIPI--NDAYLRMMVINFCLANKPTLAVRFCQAWFKQSKMLSS----TEN 325

Query: 370 VVLFVFSIINSSRHLLA 320
           ++L   S+  +S    A
Sbjct: 326 LLLIAESLSRASNDFAA 342


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 50  TKLINIVPLSYNLCCRVFHVLSKATTECDRFSLVKNKIVLFN 175
           + L  ++P ++ LC  VF    K TT+C R  ++K    L +
Sbjct: 160 SNLSTLLPNNFELCIDVFQ---KCTTQCQRELIIKKACYLLS 198


>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 615

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/24 (33%), Positives = 19/24 (79%)
 Frame = -1

Query: 418 ISGAINRSSYDLFSENVVLFVFSI 347
           ++G++++ SY+LFS++   FV+ +
Sbjct: 1   MAGSVDKPSYELFSKDTRAFVYGM 24


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,625,825
Number of Sequences: 5004
Number of extensions: 53914
Number of successful extensions: 113
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)