Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40289
         (703 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53139-9|AAW88402.1|  379|Caenorhabditis elegans Serpentine rece...    30   1.8  
U53139-8|AAK18938.3|  338|Caenorhabditis elegans Serpentine rece...    30   1.8  
U40945-1|AAA81719.2|  656|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AC024757-1|AAF59450.3|  490|Caenorhabditis elegans Hypothetical ...    28   7.4  
U28737-1|AAA68271.1|  115|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AF016419-8|AAG24053.1|  293|Caenorhabditis elegans Serpentine re...    27   9.8  

>U53139-9|AAW88402.1|  379|Caenorhabditis elegans Serpentine
           receptor, class w protein68, isoform b protein.
          Length = 379

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 555 CIFVINLYEKVNQDLVNCCRKLHLQKIQIGLP 650
           C+ V + Y K  +D+  CCRK  + KI+  +P
Sbjct: 335 CLTVSSHYRKTVKDVFKCCRKNSITKIEPTVP 366


>U53139-8|AAK18938.3|  338|Caenorhabditis elegans Serpentine
           receptor, class w protein68, isoform a protein.
          Length = 338

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 555 CIFVINLYEKVNQDLVNCCRKLHLQKIQIGLP 650
           C+ V + Y K  +D+  CCRK  + KI+  +P
Sbjct: 294 CLTVSSHYRKTVKDVFKCCRKNSITKIEPTVP 325


>U40945-1|AAA81719.2|  656|Caenorhabditis elegans Hypothetical
           protein F10D7.1 protein.
          Length = 656

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -3

Query: 566 YKNTLSKASLLCIS*FYTFNEQFLYINIYVY 474
           Y+N   +ASL+C   F+ F   FLY++I ++
Sbjct: 176 YRNNFFRASLVCPFIFFIFMLSFLYMHIVIH 206


>AC024757-1|AAF59450.3|  490|Caenorhabditis elegans Hypothetical
           protein Y37E11AL.5 protein.
          Length = 490

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
 Frame = +1

Query: 349 LKTRIKQHFLKI----NRS*IDLSPPKSPVYKIL*KSLEPF--PRFSLY 477
           L T  + H +++    N +  +L  PKSPV  I   SLEPF   R S+Y
Sbjct: 60  LPTTDENHVVRVVCTSNATLFELLEPKSPVLSIKPDSLEPFGTTRMSIY 108


>U28737-1|AAA68271.1|  115|Caenorhabditis elegans Hypothetical
           protein F14B8.4 protein.
          Length = 115

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 675 ISNYSKLVLVDLFVFSADATYDN 607
           IS Y+K+ L+ LF+FS  A Y N
Sbjct: 3   ISGYAKMHLLQLFIFSLVAAYCN 25


>AF016419-8|AAG24053.1|  293|Caenorhabditis elegans Serpentine
           receptor, class x protein6 protein.
          Length = 293

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 20/81 (24%), Positives = 32/81 (39%)
 Frame = -3

Query: 686 IYIKLVTTVS*YW*TYLYFLQMQLTTTVYQILINFLIQINYKNTLSKASLLCIS*FYTFN 507
           I+I L+T  S       YFL   +      I+    + I   ++ S   LL    F T  
Sbjct: 113 IFIILITLTSFSAACIQYFLPCCVLIVDIDIMSYMFLSIEGVHSYSNDILLVYDVFCTSI 172

Query: 506 EQFLYINIYVYKLNLGNGSND 444
             F Y+++++Y  N      D
Sbjct: 173 STFCYVSVFIYIRNANRNVED 193


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,189,594
Number of Sequences: 27780
Number of extensions: 290866
Number of successful extensions: 644
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)