Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40289
         (703 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g27950.1 68416.m03488 early nodule-specific protein, putative...    33   0.14 
At5g45095.1 68418.m05532 expressed protein                             27   9.1  
At4g04680.1 68417.m00684 hypothetical protein                          27   9.1  
At2g47540.1 68415.m05933 pollen Ole e 1 allergen and extensin fa...    27   9.1  

>At3g27950.1 68416.m03488 early nodule-specific protein, putative
           similar to nodulin (GI:1009720) and early
           nodulin(GI:304037 ) Medicago truncatula];
          Length = 361

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = -3

Query: 548 KASLLCIS*FYTFNEQFLYINIYVYKLNLGNGSNDFHKILYTGDFG 411
           + +L C S F+   +   +I+     L+L N +NDF K LYT D G
Sbjct: 113 RPTLACFSPFHLGTQVSQFIHFKTRTLSLYNQTNDFSKALYTLDIG 158


>At5g45095.1 68418.m05532 expressed protein 
          Length = 394

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = -1

Query: 499 SCILIYMYIN*ISETAPTIFIKFCIQGISGAINRSSYDLFSENVV 365
           SCI+    ++ ++ T  T+ + +C Q +S  + +SS  +  E +V
Sbjct: 97  SCIISSNVLSLMTTTMTTLLVCYCSQRLSFPLKKSSRIILEERIV 141


>At4g04680.1 68417.m00684 hypothetical protein
          Length = 261

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -3

Query: 623 MQLTTTVYQILINFLIQI--NYKNTLSKASLLCIS*FYTFNEQFLYINIY 480
           M L TT   I + +L+QI  NYK+   K +   +   +T N  FL+ +IY
Sbjct: 156 MFLATTFPDISMCYLLQILENYKDNKHKLTYFLL--IFTRNRNFLFPSIY 203


>At2g47540.1 68415.m05933 pollen Ole e 1 allergen and extensin
           family protein contains Pfam domain, PF01190: Pollen
           proteins Ole e I family
          Length = 173

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 660 KLVLVDLFVFSADATYDNSLPN 595
           KL  V  FVFS++ T D S+PN
Sbjct: 150 KLFTVGPFVFSSEETQDKSIPN 171


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,879,121
Number of Sequences: 28952
Number of extensions: 251579
Number of successful extensions: 511
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)