Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40287
         (282 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    23   0.47 
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    22   1.4  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           20   4.4  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    19   7.7  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    19   7.7  

>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 23.4 bits (48), Expect = 0.47
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 102 KQLLCEGRGKEEKVLEFLMSRHTPP 176
           K L+CE  G+ E  L    S  TPP
Sbjct: 187 KNLICEIDGRHEFFLAEFKSAKTPP 211


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 21.8 bits (44), Expect = 1.4
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -3

Query: 157 IRNSSTFSSFPLPSHSNCFSVI 92
           IRN  T   F LP+  NC   +
Sbjct: 10  IRNRGTPPKFELPTTHNCLKKV 31


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 20.2 bits (40), Expect = 4.4
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +3

Query: 66  KQIPSTIAAMTEKQLLCEGRGKEEKVLEFLMSRHTPPYPSALSSL 200
           + IP+++AA    Q    GRG  +K+ +    R    Y  +L  +
Sbjct: 110 QHIPASVAAAFAPQGPSTGRGASKKLSKVETLRLAVEYIRSLKQM 154



 Score = 20.2 bits (40), Expect = 4.4
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 145 STFSSFPLPSHSNCFSVIAA 86
           S  SS P PSHS+  S  AA
Sbjct: 197 SEASSSPTPSHSSESSFSAA 216


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 19.4 bits (38), Expect = 7.7
 Identities = 8/19 (42%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
 Frame = +1

Query: 169 HHHIHQ-PCLLLSTNNQGF 222
           HHH H  P  + + NN  F
Sbjct: 51  HHHSHMPPHSVFAANNAEF 69


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 19.4 bits (38), Expect = 7.7
 Identities = 8/19 (42%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
 Frame = +1

Query: 169 HHHIHQ-PCLLLSTNNQGF 222
           HHH H  P  + + NN  F
Sbjct: 51  HHHSHMPPHSVFAANNAEF 69


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,786
Number of Sequences: 336
Number of extensions: 1027
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 48
effective length of database: 106,457
effective search space used:  4790565
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)