Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40287
         (282 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    27   0.51 
SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual     26   1.2  
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc...    25   2.7  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    24   3.6  
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|...    23   6.3  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    23   6.3  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    23   8.3  

>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1142

 Score = 27.1 bits (57), Expect = 0.51
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 154  RNSSTFSSFPLPSHSNCFSVIAAIV 80
            RN S   S P P+H N FS+I  I+
Sbjct: 1027 RNLSMHWSIPFPTHHNFFSIIPFIL 1051


>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 435

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 17/65 (26%), Positives = 27/65 (41%)
 Frame = +2

Query: 5   N*VFNFIEDLQGGMRDIDRDKTDTINNSCNDRKAVTM*REREGRKGARVSDE*AYTTISI 184
           N V NF++      R+  R     +     D KA+T+   R+  +    + +     I I
Sbjct: 285 NKVANFVKAFNQDGREFIRSSVQKLLGFSKDEKAITVFPPRKRARKLEENKDPVRQDIPI 344

Query: 185 SPVFS 199
            PVFS
Sbjct: 345 PPVFS 349


>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 24.6 bits (51), Expect = 2.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 242 KARFCIQNPWLFVLKRRQG*WIWWCMPTH 156
           +  FC  +P+  V   R G  I+W M TH
Sbjct: 233 QVNFCNDSPYNLVSCSRDGSIIFWDMRTH 261


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 211 YSCLREDRADGYGGVCLLIRNSSTFSSFPLP 119
           +S + E   D    V   ++N   FSS+PLP
Sbjct: 397 HSSITEKTRDIAKNVATWLKNGENFSSWPLP 427


>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 512

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 171 VYAYSSETLAPFLPSLSLH 115
           VY Y ++T  PF  +++LH
Sbjct: 400 VYIYDTQTCKPFYRAVNLH 418


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -3

Query: 151 NSSTFSSFPLPSHSNCFSVIAAIVDGICFVSIYVPHPS 38
           NSS F  F     SN  S++ A +D        V HPS
Sbjct: 237 NSSRFGKFIRIEFSNNGSIVGANLDWYLLEKSRVIHPS 274


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 983

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +2

Query: 11   VFNFIEDLQGGMRDIDRDKTDTIN 82
            VF F  D  GGM +       T+N
Sbjct: 949  VFMFCRDANGGMENFQNQYLSTVN 972


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,044,650
Number of Sequences: 5004
Number of extensions: 18175
Number of successful extensions: 49
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 63619130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)