BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV40287 (282 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 01_02_0074 + 10869546-10871373,10871449-10872077 27 2.2 10_01_0003 + 46158-46428,46588-46706,46819-46928,48977-49415,495... 26 5.2 06_01_0240 - 1822086-1822216,1822311-1822367,1822788-1822842,182... 26 5.2 03_06_0631 + 35193737-35193906,35194010-35194076,35194237-351944... 25 9.0 >01_02_0074 + 10869546-10871373,10871449-10872077 Length = 818 Score = 27.1 bits (57), Expect = 2.2 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%) Frame = -3 Query: 250 TWLKPDFVFKIPGYS-CLREDRADGYGG 170 TW K ++V KIP S LR D GY G Sbjct: 616 TWYKNEYVSKIPMTSMALRPDAEHGYPG 643 >10_01_0003 + 46158-46428,46588-46706,46819-46928,48977-49415, 49511-49633,49805-50106,50143-50350,50729-51448 Length = 763 Score = 25.8 bits (54), Expect = 5.2 Identities = 11/27 (40%), Positives = 16/27 (59%) Frame = -3 Query: 115 HSNCFSVIAAIVDGICFVSIYVPHPSL 35 H + ++I A D +C V YVP+ SL Sbjct: 533 HPHLVTLIGACPDALCLVYEYVPNGSL 559 >06_01_0240 - 1822086-1822216,1822311-1822367,1822788-1822842, 1824585-1824674,1824848-1824995,1825095-1825351 Length = 245 Score = 25.8 bits (54), Expect = 5.2 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%) Frame = -3 Query: 196 EDRADGYGGVCLLIR-NSSTFSSFPLPSHS 110 E R DGY V L++ N TF+ PL SH+ Sbjct: 100 EMRTDGYVRVRDLLKLNLQTFAKIPLKSHT 129 >03_06_0631 + 35193737-35193906,35194010-35194076,35194237-35194426, 35194571-35194767 Length = 207 Score = 25.0 bits (52), Expect = 9.0 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +3 Query: 96 TEKQLLCEGRGKEEKVLEFLMSRHTPPYP 182 +E++LLC GKE V +FL R+ P P Sbjct: 166 SEEELLC---GKEGDVKDFLRLRNLSPLP 191 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 6,604,172 Number of Sequences: 37544 Number of extensions: 116601 Number of successful extensions: 300 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 297 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 300 length of database: 14,793,348 effective HSP length: 70 effective length of database: 12,165,268 effective search space used: 279801164 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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