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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40287
         (282 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_02_0074 + 10869546-10871373,10871449-10872077                       27   2.2  
10_01_0003 + 46158-46428,46588-46706,46819-46928,48977-49415,495...    26   5.2  
06_01_0240 - 1822086-1822216,1822311-1822367,1822788-1822842,182...    26   5.2  
03_06_0631 + 35193737-35193906,35194010-35194076,35194237-351944...    25   9.0  

>01_02_0074 + 10869546-10871373,10871449-10872077
          Length = 818

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -3

Query: 250 TWLKPDFVFKIPGYS-CLREDRADGYGG 170
           TW K ++V KIP  S  LR D   GY G
Sbjct: 616 TWYKNEYVSKIPMTSMALRPDAEHGYPG 643


>10_01_0003 +
           46158-46428,46588-46706,46819-46928,48977-49415,
           49511-49633,49805-50106,50143-50350,50729-51448
          Length = 763

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 115 HSNCFSVIAAIVDGICFVSIYVPHPSL 35
           H +  ++I A  D +C V  YVP+ SL
Sbjct: 533 HPHLVTLIGACPDALCLVYEYVPNGSL 559


>06_01_0240 -
           1822086-1822216,1822311-1822367,1822788-1822842,
           1824585-1824674,1824848-1824995,1825095-1825351
          Length = 245

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 196 EDRADGYGGVCLLIR-NSSTFSSFPLPSHS 110
           E R DGY  V  L++ N  TF+  PL SH+
Sbjct: 100 EMRTDGYVRVRDLLKLNLQTFAKIPLKSHT 129


>03_06_0631 +
           35193737-35193906,35194010-35194076,35194237-35194426,
           35194571-35194767
          Length = 207

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 96  TEKQLLCEGRGKEEKVLEFLMSRHTPPYP 182
           +E++LLC   GKE  V +FL  R+  P P
Sbjct: 166 SEEELLC---GKEGDVKDFLRLRNLSPLP 191


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,604,172
Number of Sequences: 37544
Number of extensions: 116601
Number of successful extensions: 300
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 279801164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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