Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40287
         (282 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY180919-1|AAN87272.1|  884|Drosophila melanogaster ORF1 protein.      33   0.054
AE014297-3306|AAN13936.2|  913|Drosophila melanogaster CG10868-P...    26   8.2  
AE014297-3305|AAN13935.1|  913|Drosophila melanogaster CG10868-P...    26   8.2  

>AY180919-1|AAN87272.1|  884|Drosophila melanogaster ORF1 protein.
          Length = 884

 Score = 33.1 bits (72), Expect = 0.054
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -3

Query: 253 ETWLKPDFVFKIPGYSCLREDRADGY-GGVCLLIRNSSTFSSFP-LPSH 113
           ETWL     F IP Y+  R DR +   GGV + + N+      P + SH
Sbjct: 45  ETWLTHSDRFNIPEYTIYRNDRKESRGGGVAIAVSNTLIHEQIPCIKSH 93


>AE014297-3306|AAN13936.2|  913|Drosophila melanogaster CG10868-PD,
           isoform D protein.
          Length = 913

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 17  NFIEDLQGGMRDIDRDKTDTINNSCN 94
           NF +D       ID+D TD  N+ CN
Sbjct: 55  NFAQD--SSANSIDQDSTDNTNSDCN 78


>AE014297-3305|AAN13935.1|  913|Drosophila melanogaster CG10868-PB,
           isoform B protein.
          Length = 913

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 17  NFIEDLQGGMRDIDRDKTDTINNSCN 94
           NF +D       ID+D TD  N+ CN
Sbjct: 55  NFAQD--SSANSIDQDSTDNTNSDCN 78


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,160,516
Number of Sequences: 53049
Number of extensions: 198740
Number of successful extensions: 474
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 24,988,368
effective HSP length: 72
effective length of database: 21,168,840
effective search space used: 444545640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)