Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40286
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    25   6.6  
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    25   6.6  
SPAC1F7.08 |fio1||iron transport multicopper oxidase Fio1|Schizo...    25   8.7  
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    25   8.7  

>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 100 HYPENQS*SAKLKPDHPLPQKVPAFVPP 17
           H  +  + S  + PD+  P +VP  +PP
Sbjct: 155 HLSDPSAVSTPISPDYSFPLRVPINIPP 182


>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 224 LQFHLWQ*LFCYI*KCPKCDSGQYSFCSTKRHRAHFGRI 108
           LQ  LW  +  Y+ +  +C++G YS    K  + HFG I
Sbjct: 262 LQSALWTAVSSYLEE--RCNNGLYSKLLVKAAKQHFGDI 298


>SPAC1F7.08 |fio1||iron transport multicopper oxidase
           Fio1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 622

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 147 LFN*TASSTFRKNPGRT 97
           LFN TA++TF   PG+T
Sbjct: 196 LFNDTANATFAMEPGKT 212


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 200 LFCYI*KCPKCDSGQYSF 147
           + C + KCPK ++G+Y F
Sbjct: 230 MICLLAKCPKFNTGKYVF 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,363,916
Number of Sequences: 5004
Number of extensions: 44942
Number of successful extensions: 96
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)