Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40286
         (614 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0035 + 19078267-19078479,19078588-19078674,19079792-190798...    29   2.9  
09_04_0465 + 17827224-17827997,17828711-17829024,17829949-178303...    28   6.8  

>02_04_0035 +
           19078267-19078479,19078588-19078674,19079792-19079863,
           19080338-19080526,19080599-19080718,19081348-19081430,
           19081518-19081773,19081878-19082199,19086355-19086548,
           19087135-19087227,19089327-19089497,19089580-19089699,
           19090303-19090373,19090608-19090675,19091097-19091191
          Length = 717

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
 Frame = -2

Query: 286 KMSSFLPQKTIEKSMYTYY---KFFNFIFGNNYFVIFKNVRNVIQVSTVFVQLNGIEHIS 116
           + S +  +K +E SM +Y    K      G+  +  FK++ + ++++ V V+L  ++H  
Sbjct: 519 RKSGYPKEKLLESSMRSYQGPAKEEKLPMGDAVYYYFKDIYDALRIAQVGVRLIFLDHDY 578

Query: 115 EESRSHYPENQ 83
            E R   P+ +
Sbjct: 579 SEFRPVVPDEE 589


>09_04_0465 +
           17827224-17827997,17828711-17829024,17829949-17830397,
           17830641-17830756
          Length = 550

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
 Frame = -1

Query: 152 SFCSTKRHRAHFGRIPVALSRK--PKLVGQT*T--GPSPAPKGTRLCP 21
           S   +  H  H    P  L R+  P L  QT      SPAP GT+L P
Sbjct: 38  SLSLSSHHHHHHRLAPTPLRRRIPPLLASQTPNPEADSPAPAGTKLAP 85


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,111,932
Number of Sequences: 37544
Number of extensions: 250925
Number of successful extensions: 547
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)