Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40286
(614 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_31697| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_39940| Best HMM Match : Mnd1 (HMM E-Value=4.5e-16) 29 4.0
SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061) 28 5.2
SB_32577| Best HMM Match : PH (HMM E-Value=7e-17) 28 5.2
SB_19564| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
>SB_55640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1071
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 102 RTIPKTKASRPNLNRTIPCPKRYPPLSHRST 10
R P T+ P+ R PC +RY P + R T
Sbjct: 650 RYTPSTERYTPSTERYTPCTERYSPCTERYT 680
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = -3
Query: 102 RTIPKTKASRPNLNRTIPCPKRYPPLSHRST 10
R P TK P R PC KRY P + R T
Sbjct: 841 RYTPSTKRYTPCYERYTPCTKRYIPSAKRYT 871
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = -3
Query: 126 STFRKNP--GRTIPKTKASRPNLNRTIPCPKRYPPLSHRST 10
ST R P R P TK P+ R PC +RY P + R T
Sbjct: 845 STKRYTPCYERYTPCTKRYIPSAKRYTPCTERYTPCTKRYT 885
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -3
Query: 117 RKNPGRTIPKTKASRPNLNRTIPCPKRYPPLSHRST 10
R N P T+ P R IPC +RY P + R T
Sbjct: 617 RYNAPSQSPCTERYTPCTERYIPCTERYTPCTERYT 652
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = -3
Query: 126 STFRKNPG--RTIPKTKASRPNLNRTIPCPKRYPPLSHRSTYVN 1
ST R P R P T+ P R PC +RY P + R T N
Sbjct: 654 STERYTPSTERYTPCTERYSPCTERYTPCTERYTPCTERYTPCN 697
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 93 PKTKASRPNLNRTIPCPKRYPPLSHRST 10
P T+ P+ R PC KRY P + R T
Sbjct: 718 PCTERYTPSTERYTPCTKRYTPSTERYT 745
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -3
Query: 102 RTIPKTKASRPNLNRTIPCPKRYPPLSHRST 10
R P TK P+ R PC +RY P R T
Sbjct: 729 RYTPCTKRYTPSTERYTPCTERYTPCYERYT 759
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -3
Query: 102 RTIPKTKASRPNLNRTIPCPKRYPPLSHRST 10
R P T+ P R PC KRY P + R T
Sbjct: 743 RYTPCTERYTPCYERYTPCTKRYTPCTERYT 773
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = -3
Query: 126 STFRKNP--GRTIPKTKASRPNLNRTIPCPKRYPPLSHRST 10
ST R P R P TK P R PC +RY P + R T
Sbjct: 810 STERYTPCTERYTPSTKRYTPCYERYTPCIERYTPSTKRYT 850
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -3
Query: 102 RTIPKTKASRPNLNRTIPCPKRYPPLSHRS 13
R IP K P R PC KRY P + S
Sbjct: 862 RYIPSAKRYTPCTERYTPCTKRYTPSTEPS 891
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 102 RTIPKTKASRPNLNRTIPCPKRYPPLSHRST 10
R P T+ P+ R PC +RY P + R T
Sbjct: 799 RYTPYTERYTPSTERYTPCTERYTPSTKRYT 829
>SB_31697| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 518
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 132 ASSTFRKNPGRTIPKTKASRPNLNRTIP 49
ASS F+KN PKT S+P+ +R P
Sbjct: 449 ASSAFQKNTPSPSPKTTPSKPSWSRPTP 476
>SB_39940| Best HMM Match : Mnd1 (HMM E-Value=4.5e-16)
Length = 179
Score = 28.7 bits (61), Expect = 4.0
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +3
Query: 285 LYNKYYASMSYNARNNP 335
LY++YYA MSY+ +NP
Sbjct: 10 LYSRYYARMSYDRNSNP 26
>SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
Length = 1354
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/29 (34%), Positives = 21/29 (72%)
Frame = +2
Query: 140 LNKNCTDLNHISDIFKYNKIVIAKDEIEE 226
LN+ +D ++SD+ Y ++V+ ++EIE+
Sbjct: 413 LNEEMSDHKNMSDLGAYEEVVVKREEIEK 441
>SB_32577| Best HMM Match : PH (HMM E-Value=7e-17)
Length = 1248
Score = 28.3 bits (60), Expect = 5.2
Identities = 10/29 (34%), Positives = 21/29 (72%)
Frame = +2
Query: 140 LNKNCTDLNHISDIFKYNKIVIAKDEIEE 226
LN+ +D ++SD+ Y ++V+ ++EIE+
Sbjct: 192 LNEEMSDHKNMSDLGAYEEVVVKREEIEK 220
>SB_19564| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 27.5 bits (58), Expect = 9.1
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 78 SRPNLNRTIPCPKRYPPLSH 19
+R L+ +PCP++YP SH
Sbjct: 726 AREALSNALPCPEKYPENSH 745
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,198,814
Number of Sequences: 59808
Number of extensions: 317960
Number of successful extensions: 730
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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