Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40286
         (614 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64598-2|AAK39214.2|  558|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AC024756-2|AAK29884.1|  413|Caenorhabditis elegans Hypothetical ...    28   4.6  

>U64598-2|AAK39214.2|  558|Caenorhabditis elegans Hypothetical
           protein C52B9.4 protein.
          Length = 558

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 149 NCTDLNHISDIFKYNKIVIAKDEIE 223
           N T+ NHI D F YN+IV  K  ++
Sbjct: 96  NETNQNHIPDTFDYNEIVYYKSPVQ 120


>AC024756-2|AAK29884.1|  413|Caenorhabditis elegans Hypothetical
           protein Y34D9A.1 protein.
          Length = 413

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/27 (40%), Positives = 21/27 (77%)
 Frame = -2

Query: 247 SMYTYYKFFNFIFGNNYFVIFKNVRNV 167
           S+Y +++ F+ +FG+N F  F+NV+N+
Sbjct: 133 SIYRHFQVFDHLFGDNIF--FENVQNL 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,226,733
Number of Sequences: 27780
Number of extensions: 254978
Number of successful extensions: 659
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)