Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40286
         (614 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    24   1.4  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    24   1.4  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    24   1.4  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    22   5.5  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    22   5.5  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   7.2  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   7.2  

>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -2

Query: 286 KMSSFLPQKTIEKSMYTYYKFFNFIFGNNYFVIFKNVRNVIQV 158
           K+ S L  KTI  +    Y + N  + NN   ++ N+  + Q+
Sbjct: 80  KIISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQI 122


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -2

Query: 286 KMSSFLPQKTIEKSMYTYYKFFNFIFGNNYFVIFKNVRNVIQV 158
           K+ S L  KTI  +    Y + N  + NN   ++ N+  + Q+
Sbjct: 80  KIISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQI 122


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -2

Query: 286 KMSSFLPQKTIEKSMYTYYKFFNFIFGNNYFVIFKNVRNVIQV 158
           K+ S L  KTI  +    Y + N  + NN   ++ N+  + Q+
Sbjct: 80  KIISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQI 122


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 82  FGFRDSATGILP 117
           FGF D+A G+LP
Sbjct: 194 FGFYDTARGMLP 205


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 82  FGFRDSATGILP 117
           FGF D+A G+LP
Sbjct: 194 FGFYDTARGMLP 205


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -2

Query: 277 SFLPQKTIEKSMYTYYKF 224
           +FLP+KT  +  Y +  F
Sbjct: 464 NFLPEKTANRHYYAFVPF 481


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 12/43 (27%), Positives = 16/43 (37%)
 Frame = -2

Query: 211 FGNNYFVIFKNVRNVIQVSTVFVQLNGIEHISEESRSHYPENQ 83
           + +NYF    N  N      +F Q    E       S Y +NQ
Sbjct: 138 YNDNYFYSKSNGSNSSNSDVLFKQNKEEEQTINRKNSDYLDNQ 180


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,391
Number of Sequences: 438
Number of extensions: 4027
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)