Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40285
(634 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017) 115 4e-26
SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08) 31 0.59
SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_31094| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_16197| Best HMM Match : zf-CCHC (HMM E-Value=0.19) 30 1.8
SB_19503| Best HMM Match : Kinesin (HMM E-Value=9.5e-14) 30 1.8
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 29 2.4
SB_7596| Best HMM Match : WD40 (HMM E-Value=7.1e-15) 29 2.4
SB_33907| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_33442| Best HMM Match : AAA (HMM E-Value=0) 29 3.1
SB_19245| Best HMM Match : ADK (HMM E-Value=0) 29 3.1
SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0) 29 3.1
SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029) 29 4.1
SB_51847| Best HMM Match : Peptidase_S28 (HMM E-Value=2.7e-33) 29 4.1
SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_14294| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_50977| Best HMM Match : DUF1409 (HMM E-Value=0.91) 28 5.5
SB_32058| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_7424| Best HMM Match : AAA (HMM E-Value=0) 28 5.5
SB_5376| Best HMM Match : EGF_CA (HMM E-Value=0) 28 5.5
SB_40458| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_38639| Best HMM Match : Avirulence (HMM E-Value=1.5) 28 7.2
SB_3674| Best HMM Match : Retrotrans_gag (HMM E-Value=1.7e-06) 28 7.2
SB_30636| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_40956| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_12360| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_379| Best HMM Match : ADK (HMM E-Value=3.2e-05) 27 9.6
>SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017)
Length = 1495
Score = 115 bits (276), Expect = 4e-26
Identities = 53/104 (50%), Positives = 74/104 (71%), Gaps = 1/104 (0%)
Frame = -1
Query: 634 DNLVIILRGPPGSGKSYLAKLIRDKEAEHGGTA-RIMSIDDYFCKKERLEERDPTTGKTI 458
D +VIILRGPPGSGK+++AKLI+DKE G A RI+S+DDYF + E+DP TGK I
Sbjct: 1248 DRIVIILRGPPGSGKTHVAKLIKDKEVSSGAHAPRILSLDDYFLTEVEKTEKDPETGKRI 1307
Query: 457 KKPTLKYEFDKDCEESYVNSLKRAFKRSITDGYFSFLIYDAVND 326
KK +Y ++ + EE Y+ SL +AF +++ DG+F ++ DA ND
Sbjct: 1308 KKKVTEYVYEPEMEEVYMASLFKAFTKTLDDGFFPMVLMDATND 1351
>SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)
Length = 839
Score = 31.5 bits (68), Expect = 0.59
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -1
Query: 508 CKKERLEERDPTTGKTIKKPTLKYEFDKDCEESYVNSLKRAFKRSITDGY 359
C K R+ E +P T I+ P+L D E+ V+ L R T+GY
Sbjct: 7 CAKTRVSESEPETFVKIQNPSLSLFSDNLLEKILVDCLLRGDLECTTEGY 56
>SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 526
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -1
Query: 142 IRPRYCRARPLRMFTWKTCKTKL*P 68
+RPRYC RP R +T +TC+ L P
Sbjct: 34 LRPRYCTLRPCR-YTLRTCRYTLRP 57
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -1
Query: 142 IRPRYCRARPLRMFTWKTCKTKL*P 68
+RPRYC RP R +T +TC+ L P
Sbjct: 76 LRPRYCTLRPCR-YTLRTCRYTLRP 99
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -1
Query: 142 IRPRYCRARPLRMFTWKTCKTKL*P 68
+RPRYC RP R +T +TC+ L P
Sbjct: 132 LRPRYCTLRPCR-YTLRTCRYTLRP 155
>SB_31094| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1183
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -1
Query: 469 GKTIKK-PTLKYEFDKDCEESYVNSLKRAFKRSITDGYFSFLIYDAVNDLH 320
GKT+KK PTLK + D + Y +L R DG+ ++ N H
Sbjct: 213 GKTMKKVPTLKRDLDARAQSEYYRNLFRLPVEEKLDGHCECTLWSPHNKAH 263
>SB_16197| Best HMM Match : zf-CCHC (HMM E-Value=0.19)
Length = 241
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 131 TWSDPVVCGDSASGRTVYI*FLCLPVYGCECYACNRL 241
T S CG+ + + LC P Y CEC +C++L
Sbjct: 154 TQSHSTACGNCGTKHDMSARSLC-PAYNCECNSCHKL 189
>SB_19503| Best HMM Match : Kinesin (HMM E-Value=9.5e-14)
Length = 869
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Frame = -1
Query: 445 LKYEFDKDCEESYVNSLKRAFKRSITDGY----FSFLIY-DAVNDLHRHYADIWN 296
++Y K+ + Y+N+ + +K S+ GY F++ + D V +H Y +I+N
Sbjct: 34 IEYTIPKELSDGYINNKREVYKFSVLSGYNGTIFAYGQHPDNVYTVHISYLEIYN 88
>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
Length = 209
Score = 29.5 bits (63), Expect = 2.4
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = -1
Query: 484 RDPTTGKTIKKPTLKYEFDKDCEESY 407
RD TG++++ +++E D+DCE +Y
Sbjct: 153 RDQKTGESLQYAFIEFEKDEDCERAY 178
>SB_7596| Best HMM Match : WD40 (HMM E-Value=7.1e-15)
Length = 291
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3
Query: 426 LSNSYFRVGFLIVFPVVGSLSSNLSFLQK 512
L+ SY R L F VVGSL SN+ F+ +
Sbjct: 3 LTKSYLRYASLASFGVVGSLKSNVLFVSR 31
>SB_33907| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 56
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -1
Query: 622 IILRGPPGSGKSYLAKLIRDK 560
I+L GPPG GK+ LAK I ++
Sbjct: 20 ILLAGPPGCGKTLLAKAIANE 40
>SB_33442| Best HMM Match : AAA (HMM E-Value=0)
Length = 369
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -1
Query: 622 IILRGPPGSGKSYLAKLIRDKEAEHGGTARIMSIDDYFCKK 500
++L GPPG GK+ LAK + A H A I + F +K
Sbjct: 201 VLLYGPPGCGKTMLAKAV----AHHTTAAFIRVVGSEFVQK 237
>SB_19245| Best HMM Match : ADK (HMM E-Value=0)
Length = 188
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = -1
Query: 619 ILRGPPGSGKSYLA-KLIRDKEAEHGGTARIM 527
I+ GPPGSGK ++ +++RD EH + ++
Sbjct: 35 IIMGPPGSGKGTVSERIVRDFGVEHLSSGELL 66
>SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 611
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -1
Query: 622 IILRGPPGSGKSYLAKLIRDK 560
I+L GPPG GK+ LAK I ++
Sbjct: 20 ILLAGPPGCGKTLLAKAIANE 40
>SB_20689| Best HMM Match : Gelsolin (HMM E-Value=0.00029)
Length = 1866
Score = 28.7 bits (61), Expect = 4.1
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = -1
Query: 568 RDKEAEHGGTARIMSI-DDYFCKKERLEERDPTTGKTIKKPTLKYEFDKDCEESYVNSLK 392
+ KEAE + + +D +KE + +D K K+ K E DK E+ +SLK
Sbjct: 966 KQKEAERAKKEKERLLQEDKLHEKEEKDRKDKEKRKVEKE---KREKDKQVEKEKKDSLK 1022
Query: 391 RAFKRSITD 365
R KR +D
Sbjct: 1023 RVKKRKDSD 1031
>SB_51847| Best HMM Match : Peptidase_S28 (HMM E-Value=2.7e-33)
Length = 1224
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -1
Query: 634 DNLVIILRGPPGSGKSYLAK 575
D + + L GPPGSGKS L++
Sbjct: 537 DVITVYLTGPPGSGKSQLSR 556
>SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4554
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 221 CYACNRLEGQAHCTYVYLETILPCKVPNISIMSME 325
C+ NRL G +YL+ +L C+VP + S++
Sbjct: 4028 CFLINRLIGNHVEKEIYLQAMLACRVPEDILPSLD 4062
>SB_14294| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 355
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/70 (21%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Frame = +3
Query: 141 IQLYVVTRRREEPCTYNFYVFQCTVVNVTLVT-----DLRVKLIVHTYTWKPF-CLAKFQ 302
+ ++V+ RRR+ N+++ + ++TL D+ V+ + + + + PF C +
Sbjct: 54 LTVFVIMRRRKMKTVTNYFILNLAIADLTLTLICIPFDIPVQEMDYIWPYGPFMCKILYP 113
Query: 303 ISA*CLWRSL 332
+ CL+ S+
Sbjct: 114 LQTMCLFASV 123
>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4527
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/67 (25%), Positives = 30/67 (44%)
Frame = +3
Query: 84 LHVFHVNIRNGRALQ*RGRIQLYVVTRRREEPCTYNFYVFQCTVVNVTLVTDLRVKLIVH 263
L ++ + + LQ ++++V + R C YN +FQ T N V +V +
Sbjct: 154 LRLYPIEYNTNKGLQ----LEIFVESAGRLRRCHYNHRLFQQTYQNNYGVMSYKVSHSLD 209
Query: 264 TYTWKPF 284
TWK +
Sbjct: 210 ATTWKDY 216
>SB_50977| Best HMM Match : DUF1409 (HMM E-Value=0.91)
Length = 256
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -3
Query: 83 DEVIADDTRETE-RNSTEPANRFGHHN 6
DE+ DT + R ST NR+GHHN
Sbjct: 226 DELTETDTESIDSRCSTSRINRYGHHN 252
>SB_32058| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 170
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = -1
Query: 514 YFCKKERLEERDPTTGKTIKKPTLKYEFDKDCEESYVNSLKRAFKR 377
Y C ++ ER P +++P ++ + ESY NSL +R
Sbjct: 40 YLCYGKKEAERSPGDPLVLERPPPRWSSNSPYSESYYNSLAVVLQR 85
>SB_7424| Best HMM Match : AAA (HMM E-Value=0)
Length = 294
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -1
Query: 619 ILRGPPGSGKSYLAKLI 569
IL GPPG+GK+ LAK +
Sbjct: 85 ILSGPPGTGKTLLAKAV 101
>SB_5376| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 1705
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 198 HRNYMYTVLPDAESPHTTGSDHVTAERGHYG 106
HR+Y + PDA +T GS + T G+ G
Sbjct: 1488 HRDYAHNCHPDANCTNTKGSFYCTCHVGYSG 1518
>SB_40458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1383
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -1
Query: 481 DPTTGKTIKKPTLKYEFDKDCEESYVNSLKRAFKRS 374
DP+ + +K TLK K EE+ +N ++ F S
Sbjct: 685 DPSCATSSRKGTLKRSLSKSYEETTINKMRVVFNAS 720
>SB_38639| Best HMM Match : Avirulence (HMM E-Value=1.5)
Length = 546
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 222 HSQPYTGRHRNYMYTVLPDAESPHTTGSDHVT 127
H+ P+ RH TVLP + HT S H T
Sbjct: 315 HTAPF--RHATTTITVLPSRYNNHTASSSHAT 344
>SB_3674| Best HMM Match : Retrotrans_gag (HMM E-Value=1.7e-06)
Length = 882
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = -3
Query: 413 VVREFIEKSIQEKHNRRVLFISDLRRGQ*SP*TLC*YLELCKAEW 279
++R+ +++ +QEK +I+D+RR LC L+L K+EW
Sbjct: 160 LLRQQLDQRVQEKFEPLAQYIADIRR-------LCQRLKLPKSEW 197
>SB_30636| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 625 VIILRGPPGSGKSYLAKLIRDKEAEHGGTARI 530
V+ L GP GSGKS L + + E + GT +
Sbjct: 49 VVCLIGPSGSGKSTLLRCVNLLEQPNEGTIHV 80
>SB_40956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1086
Score = 27.5 bits (58), Expect = 9.6
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = -1
Query: 622 IILRGPPGSGKSYLAKLI 569
++L GPPG+GK+ +AK +
Sbjct: 847 VLLYGPPGTGKTLMAKAV 864
>SB_12360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 140
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -1
Query: 511 FCKKERLEERDPTTGKTIKKPTLKYEFDKDCEESYVNSLKRAFKR 377
F K+E E+ P +++P ++ + ESY NSL +R
Sbjct: 12 FLKREDEREKSPGDPLVLERPPPRWSSNSPYSESYYNSLAVVLQR 56
>SB_379| Best HMM Match : ADK (HMM E-Value=3.2e-05)
Length = 991
Score = 27.5 bits (58), Expect = 9.6
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Frame = -1
Query: 622 IILRGPPGSGKSYLAKLIRDKEAEHGGTARIMSIDDYF------CKKERLEE-RDPTTGK 464
+ + GPP SGK+ +AK + ++ A+++ +D+ KK+ L+E RD
Sbjct: 322 VCVLGPPHSGKTLVAKQLAERY-----NAKVLDVDELIKPRRDAAKKKMLDETRDEAISS 376
Query: 463 TIKKPTLKYEFDKDCEESYVNSLKRA 386
I K T + ++ +E ++ K A
Sbjct: 377 AISKVTAARQQEQAEDEEKGSAEKTA 402
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,274,805
Number of Sequences: 59808
Number of extensions: 436136
Number of successful extensions: 1505
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1501
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -