Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40285
(634 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024756-9|AAK29883.4| 430|Caenorhabditis elegans Related to ye... 33 0.17
AC024793-1|AAF60692.2| 649|Caenorhabditis elegans Atm (ataxia t... 32 0.30
Z82054-4|CAB04842.1| 453|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z82054-1|CAB04840.1| 453|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z81109-18|CAB03255.1| 453|Caenorhabditis elegans Hypothetical p... 30 1.6
AL021501-2|CAA16415.2| 356|Caenorhabditis elegans Hypothetical ... 29 3.7
Z48334-5|CAA88312.1| 424|Caenorhabditis elegans Hypothetical pr... 28 4.8
U53149-2|AAM29664.1| 451|Caenorhabditis elegans Hypothetical pr... 28 4.8
U39994-1|AAB37019.1| 326|Caenorhabditis elegans Hypothetical pr... 28 4.8
AF016417-5|AAB65278.2| 108|Caenorhabditis elegans Hypothetical ... 28 4.8
Z69664-3|CAC42312.1| 339|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z69664-2|CAA93516.2| 342|Caenorhabditis elegans Hypothetical pr... 28 6.4
AL117203-4|CAB55106.2| 813|Caenorhabditis elegans Hypothetical ... 28 6.4
AF067222-3|AAC17019.1| 292|Caenorhabditis elegans Hypothetical ... 28 6.4
AF059715-1|AAF05624.1| 813|Caenorhabditis elegans cell survival... 28 6.4
AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg (sp... 27 8.4
>AC024756-9|AAK29883.4| 430|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 4 protein.
Length = 430
Score = 33.1 bits (72), Expect = 0.17
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = -1
Query: 622 IILRGPPGSGKSYLAKLIRDKEAE 551
I+L GPPG+GKSY+AK + + E
Sbjct: 154 ILLFGPPGTGKSYIAKAVATEAGE 177
>AC024793-1|AAF60692.2| 649|Caenorhabditis elegans Atm (ataxia
telangectasia mutated)family protein 1 protein.
Length = 649
Score = 32.3 bits (70), Expect = 0.30
Identities = 14/52 (26%), Positives = 30/52 (57%)
Frame = -1
Query: 481 DPTTGKTIKKPTLKYEFDKDCEESYVNSLKRAFKRSITDGYFSFLIYDAVND 326
D T KT+++ +++F+K+ E NSL A +++++ G+ + L + D
Sbjct: 64 DEWTKKTVQRVRKEHQFEKNDLEKVDNSLNSAARKAVSSGFDALLCISQLED 115
>Z82054-4|CAB04842.1| 453|Caenorhabditis elegans Hypothetical
protein R10D12.15 protein.
Length = 453
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 222 HSQPYTGRHRNYMYTVLPDAES 157
H+ TG + NY+YT LPD E+
Sbjct: 136 HAIQETGENNNYLYTALPDQEA 157
>Z82054-1|CAB04840.1| 453|Caenorhabditis elegans Hypothetical
protein T26F2.1 protein.
Length = 453
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 222 HSQPYTGRHRNYMYTVLPDAES 157
H+ TG + NY+YT LPD E+
Sbjct: 136 HAIQETGENNNYLYTALPDQEA 157
>Z81109-18|CAB03255.1| 453|Caenorhabditis elegans Hypothetical
protein R10D12.15 protein.
Length = 453
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 222 HSQPYTGRHRNYMYTVLPDAES 157
H+ TG + NY+YT LPD E+
Sbjct: 136 HAIQETGENNNYLYTALPDQEA 157
>AL021501-2|CAA16415.2| 356|Caenorhabditis elegans Hypothetical
protein Y61B8A.2 protein.
Length = 356
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +3
Query: 402 FTYDSSQSLSNSYFRVGFLIVFPVVGSLSSNLSFLQK*SSIDIILAVPPCSAS 560
FT+D L++S GF+ +FP+ G S++ Q + I I P + S
Sbjct: 195 FTFDVMIFLADSILIEGFIWIFPIFGIYSASFILFQVTTLIYYICIAPSITIS 247
>Z48334-5|CAA88312.1| 424|Caenorhabditis elegans Hypothetical
protein F10B5.5 protein.
Length = 424
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -1
Query: 631 NLVIILRGPPGSGKSYLAK 575
N +I+L GPPG+GK+ L K
Sbjct: 172 NRLILLTGPPGTGKTSLCK 190
>U53149-2|AAM29664.1| 451|Caenorhabditis elegans Hypothetical
protein C24B5.2a protein.
Length = 451
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = -1
Query: 622 IILRGPPGSGKSYLAKLI 569
I+L GPPG+GK+ LAK +
Sbjct: 214 ILLFGPPGNGKTLLAKAV 231
>U39994-1|AAB37019.1| 326|Caenorhabditis elegans Hypothetical
protein C48C5.3 protein.
Length = 326
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +2
Query: 356 KVPVGYASLECSFQ*IHVRLLTVF--IKLVFQSWFFNCFSC 472
K P+ YA+ SF+ + + + F VF W+ CF+C
Sbjct: 131 KFPLRYANWVTSFKGVSLAVFVWFGCFVFVFICWYLECFTC 171
>AF016417-5|AAB65278.2| 108|Caenorhabditis elegans Hypothetical
protein F17A9.1 protein.
Length = 108
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = -1
Query: 427 KDCEESYVNSLKRAFKRSITDGYFSFLIYDAVNDLHRHYAD 305
K EESY N ++ K +T F FL Y N H Y D
Sbjct: 24 KPIEESYENFCRKVGKDVMTFYEFDFLFYQFKNGNHDLYHD 64
>Z69664-3|CAC42312.1| 339|Caenorhabditis elegans Hypothetical
protein K04D7.2b protein.
Length = 339
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -1
Query: 622 IILRGPPGSGKSYLAKLI 569
I+L GPPG GK+ LAK +
Sbjct: 117 ILLYGPPGCGKTLLAKAV 134
>Z69664-2|CAA93516.2| 342|Caenorhabditis elegans Hypothetical
protein K04D7.2a protein.
Length = 342
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -1
Query: 622 IILRGPPGSGKSYLAKLI 569
I+L GPPG GK+ LAK +
Sbjct: 120 ILLYGPPGCGKTLLAKAV 137
>AL117203-4|CAB55106.2| 813|Caenorhabditis elegans Hypothetical
protein Y48C3A.7 protein.
Length = 813
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -1
Query: 622 IILRGPPGSGKSYLAKLIRDK 560
I+L GPPG GK+ LAK + ++
Sbjct: 571 ILLCGPPGCGKTLLAKAVANE 591
>AF067222-3|AAC17019.1| 292|Caenorhabditis elegans Hypothetical
protein H11E01.1 protein.
Length = 292
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Frame = -3
Query: 290 KAEWFP---GIRMYNELDPQVCYKRNIHNRTLEDIEIICTRFFPTPSHHIQLDPTTLLQS 120
+ EW P G+R + E P V ++ N+H ++ +++ +F + +++ P T S
Sbjct: 86 RVEWSPLYAGLRTFIEHFPVVFHRDNVHRLSISNVD-HDWKFISNEMNGLEI-PVTWF-S 142
Query: 119 AAITDVHME 93
A+ D+H++
Sbjct: 143 ASTDDIHLQ 151
>AF059715-1|AAF05624.1| 813|Caenorhabditis elegans cell survival
CED-4-interactingprotein MAC-1 protein.
Length = 813
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -1
Query: 622 IILRGPPGSGKSYLAKLIRDK 560
I+L GPPG GK+ LAK + ++
Sbjct: 571 ILLCGPPGCGKTLLAKAVANE 591
>AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg
(spastic paraplegia)protein 7 protein.
Length = 782
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = -1
Query: 619 ILRGPPGSGKSYLAK 575
IL GPPG+GK+ LAK
Sbjct: 330 ILTGPPGTGKTLLAK 344
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,931,201
Number of Sequences: 27780
Number of extensions: 323661
Number of successful extensions: 1183
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1183
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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