Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40285
         (634 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   1.4  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   3.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.3  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   5.7  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   9.9  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   9.9  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = +3

Query: 345 IRNEKYPSVMLLLNALFNEFTYDSSQSLSNSYFRVGFL 458
           ++ +   SV  LL+ +F+ +TYD+   L+  ++ +GF+
Sbjct: 483 VKGDVAGSVEALLD-IFDTYTYDTICQLNIVHYGIGFI 519


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 203 PVYGCECYACN 235
           P  GCEC  CN
Sbjct: 431 PPIGCECKTCN 441


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -2

Query: 219  SQPYTGRHRNYMYTVLPDAESPHTTGSDHVTAERGHYGCSH 97
            ++P  G++RNY    L +A      G   V     +YG  H
Sbjct: 1033 TRPKRGKYRNYDRDSLVEAVRAVQRGEMSVHRAGSYYGVPH 1073


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 468 PVVGSLSSNLSFLQK*SSIDIILAVPPCS 554
           PV+G  S + +F  K   +  +  VPP S
Sbjct: 124 PVIGISSRDSAFSDKNIHVSFLRTVPPYS 152


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/30 (30%), Positives = 12/30 (40%)
 Frame = +3

Query: 6   VVMAEAVCWFRRVSLSFSCIIGYNFVLHVF 95
           + M     W    S     I   NF+LH+F
Sbjct: 258 MTMTLMTLWLEPSSTERMIIANLNFILHLF 287


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -3

Query: 281 WFPGIRMYNELDPQ 240
           W P   +YN  DPQ
Sbjct: 88  WRPDTILYNNADPQ 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,771
Number of Sequences: 438
Number of extensions: 4290
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)