Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40285
(634 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to ... 102 2e-22
At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to ... 100 9e-22
At5g66910.1 68418.m08434 disease resistance protein (CC-NBS-LRR ... 31 0.48
At4g24710.1 68417.m03536 AAA-type ATPase family protein similar ... 31 0.48
At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuol... 31 0.48
At5g53540.1 68418.m06653 MSP1 protein, putative / intramitochond... 31 0.84
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 30 1.5
At4g24860.1 68417.m03559 AAA-type ATPase family protein contains... 30 1.5
At1g03560.1 68414.m00337 pentatricopeptide (PPR) repeat-containi... 30 1.5
At5g64580.1 68418.m08116 AAA-type ATPase family protein similar ... 29 1.9
At1g70140.1 68414.m08071 formin homology 2 domain-containing pro... 29 1.9
At1g64110.2 68414.m07264 AAA-type ATPase family protein contains... 29 1.9
At1g64110.1 68414.m07263 AAA-type ATPase family protein contains... 29 1.9
At5g15250.1 68418.m01786 FtsH protease, putative similar to FtsH... 29 2.6
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 29 3.4
At5g39620.1 68418.m04798 Ras-related GTP-binding protein, putati... 29 3.4
At4g27680.1 68417.m03980 MSP1 protein, putative / intramitochond... 29 3.4
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID... 29 3.4
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 29 3.4
At5g18350.1 68418.m02159 disease resistance protein (TIR-NBS-LRR... 28 4.5
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 28 4.5
At4g28000.1 68417.m04016 AAA-type ATPase family protein contains... 28 4.5
At4g02480.1 68417.m00335 AAA-type ATPase family protein contains... 28 4.5
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 28 4.5
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 28 4.5
At2g34560.2 68415.m04246 katanin, putative similar to katanin p6... 28 4.5
At2g34560.1 68415.m04245 katanin, putative similar to katanin p6... 28 4.5
At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc ... 28 4.5
At2g15130.1 68415.m01724 plant basic secretory protein (BSP) fam... 28 4.5
At1g41820.1 68414.m04825 hypothetical protein 28 4.5
At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc... 28 4.5
At1g03000.1 68414.m00271 AAA-type ATPase family protein contains... 28 4.5
At1g02890.1 68414.m00256 AAA-type ATPase family protein contains... 28 4.5
At3g30842.1 68416.m03968 ABC transporter protein, putative simil... 28 5.9
At3g27870.1 68416.m03475 haloacid dehalogenase-like hydrolase fa... 28 5.9
At3g19740.1 68416.m02499 AAA-type ATPase family protein contains... 28 5.9
At1g62130.1 68414.m07010 AAA-type ATPase family protein contains... 28 5.9
At1g50140.1 68414.m05623 AAA-type ATPase family protein contains... 28 5.9
At4g23940.1 68417.m03443 FtsH protease, putative contains simila... 27 7.8
At2g45500.1 68415.m05659 AAA-type ATPase family protein similar ... 27 7.8
>At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to
nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
cDNA provides a truncated ORF likely due to a skipped
exon. An alternative ORF is provided.
Length = 661
Score = 102 bits (244), Expect = 2e-22
Identities = 69/168 (41%), Positives = 102/168 (60%), Gaps = 25/168 (14%)
Frame = -1
Query: 634 DNLVIILRGPPGSGKSYLAKLIRDKEAEHGGTA-RIMSIDDYFCKK-ERLEERDPT---T 470
D+ VIILRG PGSGKSYLAKL+RD E E+GG+A RI S+DDYF + E++EE D T +
Sbjct: 275 DHFVIILRGLPGSGKSYLAKLLRDVEVENGGSAPRIHSMDDYFMTEVEKVEESDSTSLSS 334
Query: 469 GKT---IKKPTLKYEFDKDCEESYVNSLKRAFKRSITDGYFSFLI-----------YDA- 335
G++ I K ++Y ++ + EE+Y +S+ +AFKR++ DG FSF+I Y +
Sbjct: 335 GRSKRPIVKTVMEYCYEPEMEEAYRSSMLKAFKRTLEDGAFSFVIVCFLELTVSCWYMSL 394
Query: 334 --VNDLHRHYAD---IWNFARQNGFQVYVCTMSLTLKSVTSVTFTTVH 206
V+D + AD W A+++G++ Y+ + T K T VH
Sbjct: 395 ILVDDRNLRVADFTQFWATAKRSGYEAYI--LEATYKDPTGCAARNVH 440
Score = 34.3 bits (75), Expect = 0.068
Identities = 19/70 (27%), Positives = 37/70 (52%)
Frame = -3
Query: 248 DPQVCYKRNIHNRTLEDIEIICTRFFPTPSHHIQLDPTTLLQSAAITDVHMEDVQDEVIA 69
DP C RN+H T++ ++ + ++ PS ++QLD + + + + +++V D +
Sbjct: 430 DPTGCAARNVHGITVDQVQQMAEQWEEAPSLYMQLDIKSFTRWDDLKENEIQEV-DMDME 488
Query: 68 DDTRETERNS 39
DD ER S
Sbjct: 489 DDFGLPERKS 498
>At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to
nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
cDNA provides a truncated ORF likely due to a skipped
exon. An alternative ORF is provided.
Length = 383
Score = 100 bits (239), Expect = 9e-22
Identities = 55/105 (52%), Positives = 78/105 (74%), Gaps = 8/105 (7%)
Frame = -1
Query: 634 DNLVIILRGPPGSGKSYLAKLIRDKEAEHGGTA-RIMSIDDYFCKK-ERLEERDPT---T 470
D+ VIILRG PGSGKSYLAKL+RD E E+GG+A RI S+DDYF + E++EE D T +
Sbjct: 275 DHFVIILRGLPGSGKSYLAKLLRDVEVENGGSAPRIHSMDDYFMTEVEKVEESDSTSLSS 334
Query: 469 GKT---IKKPTLKYEFDKDCEESYVNSLKRAFKRSITDGYFSFLI 344
G++ I K ++Y ++ + EE+Y +S+ +AFKR++ DG FSF+I
Sbjct: 335 GRSKRPIVKTVMEYCYEPEMEEAYRSSMLKAFKRTLEDGAFSFVI 379
>At5g66910.1 68418.m08434 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 815
Score = 31.5 bits (68), Expect = 0.48
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -1
Query: 634 DNLVIILRGPPGSGKSYL-AKLIRDKEAE 551
DN V+++ GPPG GK+ L KL D E E
Sbjct: 188 DNSVVVVSGPPGCGKTTLVTKLCDDPEIE 216
>At4g24710.1 68417.m03536 AAA-type ATPase family protein similar to
HPV16 E1 protein binding protein [Homo sapiens]
gi|2232019|gb|AAB64095; contains Pfam domain, PF00004:
ATPase, AAA family ('A'TPases 'A'ssociated with diverse
cellular 'A'ctivities)
Length = 467
Score = 31.5 bits (68), Expect = 0.48
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -1
Query: 631 NLVIILRGPPGSGKSYLAKLIRDK 560
N +I+L GPPG+GK+ L K + K
Sbjct: 202 NRIILLHGPPGTGKTSLCKALAQK 225
>At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuolar
sorting protein-related similar to SP|P46467 SKD1
protein (Vacuolar sorting protein 4b) {Mus musculus};
contains Pfam profiles PF00004: ATPase AAA family,
PF04212: MIT domain
Length = 435
Score = 31.5 bits (68), Expect = 0.48
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = -1
Query: 619 ILRGPPGSGKSYLAKLI 569
+L GPPG+GKSYLAK +
Sbjct: 169 LLYGPPGTGKSYLAKAV 185
>At5g53540.1 68418.m06653 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 403
Score = 30.7 bits (66), Expect = 0.84
Identities = 14/24 (58%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
Frame = -1
Query: 622 IILRGPPGSGKSYLAKLI-RDKEA 554
++L GPPG+GK+ LAK I R+ EA
Sbjct: 125 VLLYGPPGTGKTMLAKAIARESEA 148
>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
identical to 26S proteasome AAA-ATPase subunit RPT3
GI:6652882 from [Arabidopsis thaliana]
Length = 408
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -1
Query: 622 IILRGPPGSGKSYLAKLIRDKEAEHGGTARIMSIDDYFCKK 500
++L GPPG+GK+ LAK + A H A I + F +K
Sbjct: 192 VLLYGPPGTGKTMLAKAV----ANHTTAAFIRVVGSEFVQK 228
>At4g24860.1 68417.m03559 AAA-type ATPase family protein contains
Pfam profile PF00004: ATPase, AAA family
Length = 1122
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/24 (58%), Positives = 19/24 (79%)
Frame = -1
Query: 622 IILRGPPGSGKSYLAKLIRDKEAE 551
I+L GPPG+GK+ LAK + KEA+
Sbjct: 858 ILLFGPPGTGKTMLAKAVA-KEAD 880
>At1g03560.1 68414.m00337 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 660
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/62 (20%), Positives = 28/62 (45%)
Frame = -1
Query: 304 IWNFARQNGFQVYVCTMSLTLKSVTSVTFTTVHWKT*KLYVHGSSRRRVTTYNWIRPRYC 125
+W ++NG + + T + + + S F + ++ G + + TYN + YC
Sbjct: 209 VWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGYC 268
Query: 124 RA 119
+A
Sbjct: 269 KA 270
>At5g64580.1 68418.m08116 AAA-type ATPase family protein similar to
zinc dependent protease [Arabidopsis thaliana]
GI:7650138; contains Pfam profile PF00004: ATPase AAA
family
Length = 855
Score = 29.5 bits (63), Expect = 1.9
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = -1
Query: 622 IILRGPPGSGKSYLAKLI 569
++L GPPG+GK+ LAK I
Sbjct: 352 VLLHGPPGTGKTLLAKAI 369
>At1g70140.1 68414.m08071 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 760
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3
Query: 414 SSQSLSNSYFRVGFLIVFPVVGSLSSNLSFLQK*SSIDIILAVPPCSA 557
S + Y ++G PVVG LSS S ++K + +D V CSA
Sbjct: 579 SKEEQEKEYLKLGL----PVVGGLSSEFSNVKKAACVDYETVVATCSA 622
>At1g64110.2 68414.m07264 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 829
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = -1
Query: 622 IILRGPPGSGKSYLAKLIRDKEA 554
I+L GPPG+GK+ LAK I KEA
Sbjct: 558 ILLFGPPGTGKTMLAKAIA-KEA 579
>At1g64110.1 68414.m07263 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 824
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = -1
Query: 622 IILRGPPGSGKSYLAKLIRDKEA 554
I+L GPPG+GK+ LAK I KEA
Sbjct: 553 ILLFGPPGTGKTMLAKAIA-KEA 574
>At5g15250.1 68418.m01786 FtsH protease, putative similar to
FtsH-like protein Pftf precursor GI:4325041 from
[Nicotiana tabacum]
Length = 687
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = -1
Query: 622 IILRGPPGSGKSYLAKLI 569
++L GPPG+GK+ LAK I
Sbjct: 259 VLLTGPPGTGKTLLAKAI 276
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -1
Query: 622 IILRGPPGSGKSYLAKLIRDK-EAEHGGTARIMSIDDYFCKKERL 491
++L GPPG+GK+ LA+ I +A ID Y + RL
Sbjct: 176 VLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARL 220
>At5g39620.1 68418.m04798 Ras-related GTP-binding protein, putative
similar to GTP-binding protein RAB7A GI:1370182 from
[Lotus japonicus]
Length = 204
Score = 28.7 bits (61), Expect = 3.4
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Frame = -1
Query: 628 LVIILRGPPGSGKSYLAKLIRDKEAE--HGGTARIMSIDDYFCKKER---LEERDPTTGK 464
L IIL G G GK+ L K DK+ + H T + + C ER L+ D +
Sbjct: 6 LKIILLGDSGVGKTSLLKRYNDKDFKQLHNSTIYVDLVTKEICIAERQVILQIWDTAGQE 65
Query: 463 TIKKPTLKYEFDKDC 419
K ++ D DC
Sbjct: 66 RFKSLPSRFYRDTDC 80
>At4g27680.1 68417.m03980 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 398
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = -1
Query: 622 IILRGPPGSGKSYLAKLI 569
++L GPPG+GK+ LAK I
Sbjct: 122 VLLYGPPGTGKTMLAKAI 139
>At1g67120.1 68414.m07636 midasin-related similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q12019)
[Saccharomyces cerevisiae]; similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
sapiens]; contains Prosite PS00017: ATP/GTP-binding site
motif A (P-loop)
Length = 5336
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 622 IILRGPPGSGKSYLAKLIRDKEAEH 548
++L GP GSGKS L + + D+ H
Sbjct: 356 VLLYGPSGSGKSALIRKLADESGNH 380
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -1
Query: 622 IILRGPPGSGKSYLAKLIRDK-EAEHGGTARIMSIDDYFCKKERL 491
++L GPPG+GK+ LA+ I +A ID Y + RL
Sbjct: 176 VLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARL 220
>At5g18350.1 68418.m02159 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1193
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = -1
Query: 634 DNLVIILRGPPGSGKSYLAKLIRDKEAEH 548
D +I + GPPG GK+ +A+ +RD+ +E+
Sbjct: 213 DVRMIGIVGPPGIGKTTIARALRDQISEN 241
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 28.3 bits (60), Expect = 4.5
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = -1
Query: 622 IILRGPPGSGKSYLAKLIRDK 560
I+L GPPGSGK+ +A+ + ++
Sbjct: 244 ILLYGPPGSGKTLIARAVANE 264
>At4g28000.1 68417.m04016 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 726
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = -1
Query: 622 IILRGPPGSGKSYLAKLIRDK 560
I+L GPPG+GK+ +AK I ++
Sbjct: 451 ILLFGPPGTGKTMMAKAIANE 471
>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to Spastin
(Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin (Fragment)
(Swiss-Prot:Q9QYY8) [Mus musculus]; similar to
mitochondrial sorting protein 1 (MSP1) protein
(TAT-binding homolog 4) (Swiss-Prot:P28737)
[Saccharomyces cerevisiae]
Length = 1265
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = -1
Query: 622 IILRGPPGSGKSYLAKLI 569
I+L GPPG+GK+ LAK +
Sbjct: 1001 ILLFGPPGTGKTMLAKAV 1018
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 28.3 bits (60), Expect = 4.5
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = -1
Query: 622 IILRGPPGSGKSYLAKLIRDK 560
I+L GPPGSGK+ +A+ + ++
Sbjct: 245 ILLYGPPGSGKTLIARAVANE 265
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 28.3 bits (60), Expect = 4.5
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = -1
Query: 622 IILRGPPGSGKSYLAKLIRDK 560
I+L GPPGSGK+ +A+ + ++
Sbjct: 244 ILLYGPPGSGKTLIARAVANE 264
>At2g34560.2 68415.m04246 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 393
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = -1
Query: 622 IILRGPPGSGKSYLAKLI 569
I+L GPPG+GK+ LAK +
Sbjct: 148 ILLFGPPGTGKTMLAKAV 165
>At2g34560.1 68415.m04245 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 384
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = -1
Query: 622 IILRGPPGSGKSYLAKLI 569
I+L GPPG+GK+ LAK +
Sbjct: 139 ILLFGPPGTGKTMLAKAV 156
>At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc
dependent protease VAR2 GI:7650138 from [Arabidopsis
thaliana]
Length = 695
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = -1
Query: 622 IILRGPPGSGKSYLAKLI 569
++L GPPG+GK+ LAK I
Sbjct: 263 VLLIGPPGTGKTLLAKAI 280
>At2g15130.1 68415.m01724 plant basic secretory protein (BSP) family
protein similar to NtPRp27 [Nicotiana tabacum]
GI:5360263; contains Pfam profile PF04450: Plant Basic
Secretory Protein
Length = 225
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = -1
Query: 436 EFDKDCEESYVNSLKRAFKRSITDGYFSFLIYDAVNDLHRHY 311
E+ D +V L + + DG+F L+ VN L R Y
Sbjct: 178 EYCNDLRNGFVAELNKKMRSDYNDGFFVDLLGKDVNQLWREY 219
>At1g41820.1 68414.m04825 hypothetical protein
Length = 401
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = -3
Query: 164 PSHHIQLDPTTLLQSAAITDVHMEDVQDEVIADDTRETERNSTEPANR 21
P HH +L+P L + + V +E +A+ R+ R+ T+ N+
Sbjct: 344 PEHHPKLEPAEQLIAEEQLGAEEQHVVEEALAEPRRQMTRSKTKLLNQ 391
>At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc
dependent protease GI:7650138 from [Arabidopsis
thaliana]
Length = 685
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = -1
Query: 622 IILRGPPGSGKSYLAKLI 569
++L GPPG+GK+ LAK I
Sbjct: 256 VLLVGPPGTGKTLLAKAI 273
>At1g03000.1 68414.m00271 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 941
Score = 28.3 bits (60), Expect = 4.5
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = -1
Query: 622 IILRGPPGSGKSYLAKLI 569
++L GPPG+GK+ LAK +
Sbjct: 694 VLLYGPPGTGKTLLAKAV 711
>At1g02890.1 68414.m00256 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to
mitochondrial sorting protein 1 (MSP1) (TAT-binding
homolog 4) (Swiss-Prot:P28737) [Saccharomyces cerevisiae]
Length = 1252
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = -1
Query: 622 IILRGPPGSGKSYLAKLI 569
I+L GPPG+GK+ LAK +
Sbjct: 988 ILLFGPPGTGKTMLAKAV 1005
>At3g30842.1 68416.m03968 ABC transporter protein, putative similar
to pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1406
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -1
Query: 619 ILRGPPGSGKSYLAKLIRDK 560
+L GPPGSGKS L K + K
Sbjct: 176 LLLGPPGSGKSTLLKALSGK 195
>At3g27870.1 68416.m03475 haloacid dehalogenase-like hydrolase family
protein similar to Potential phospholipid-transporting
ATPase (EC 3.6.3.1) from {Mus musculus} SP|P98200, Homo
sapiens SP|O43520, {Arabidopsis thaliana} SP|P98204;
contains InterPro accession IPR005834: Haloacid
dehalogenase-like hydrolase
Length = 1174
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -1
Query: 112 LRMFTWKTCKTKL*PMIHEKLSETRRNQQTASA 14
L FT++ + K PM H+ + E RR ++T +A
Sbjct: 1112 LPYFTYRAFQIKFRPMYHDIIVEQRRTERTETA 1144
>At3g19740.1 68416.m02499 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 439
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = -1
Query: 622 IILRGPPGSGKSYLAKLI 569
I+L GPPG+GK+ LAK +
Sbjct: 188 ILLFGPPGTGKTLLAKAL 205
>At1g62130.1 68414.m07010 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 1025
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = -1
Query: 622 IILRGPPGSGKSYLAKLIRDKEAEHGGTARIMSIDDYFCKKER 494
I+L GP G+GK+ LAK + E G MS+ +F + E+
Sbjct: 773 ILLFGPSGTGKTMLAKAV---ATEAGANLINMSMSRWFSEGEK 812
>At1g50140.1 68414.m05623 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 640
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = -1
Query: 622 IILRGPPGSGKSYLAKLI 569
I+L GPPG+GK+ LAK +
Sbjct: 389 ILLFGPPGTGKTLLAKAL 406
>At4g23940.1 68417.m03443 FtsH protease, putative contains
similarity to zinc dependent protease GI:7650138 from
[Arabidopsis thaliana]
Length = 946
Score = 27.5 bits (58), Expect = 7.8
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -1
Query: 622 IILRGPPGSGKSYLAKLI 569
++L GPPG GK+ +AK I
Sbjct: 466 VLLEGPPGCGKTLVAKAI 483
>At2g45500.1 68415.m05659 AAA-type ATPase family protein similar to
SP|Q9QYY8 Spastin (Fragment) {Mus musculus}; contains
Pfam profiles PF00004: ATPase AAA family, PF04212: MIT
domain
Length = 487
Score = 27.5 bits (58), Expect = 7.8
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = -1
Query: 622 IILRGPPGSGKSYLAKLI 569
++L GPPG+GK+ LAK +
Sbjct: 252 LLLFGPPGNGKTMLAKAV 269
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,943,867
Number of Sequences: 28952
Number of extensions: 292228
Number of successful extensions: 1070
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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