Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40284
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    28   1.1  
SPAC7D4.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   3.5  
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    25   8.0  
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    25   8.0  

>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +3

Query: 21  LYIDIANNVDFPIGH*ERPAYTNMNLAYLPDYI 119
           LY D A ++ + + H E  +Y+N+NL   PDY+
Sbjct: 373 LYHDDAEDIYYDLHHTE--SYSNINLTKTPDYV 403


>SPAC7D4.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 96

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 128 KYGYIIGKVRQVHIGIRRSLLMSYRKIDIVSYIDI*EPV 12
           K+ Y   K+  VH  I    +MSY   D+V +  I  P+
Sbjct: 27  KFAYSSRKIESVHCAITDDEVMSYNNEDMVPFSAINLPI 65


>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 445 PHPSNRNALLLHGRNRQGIPT 507
           PHP N   +LL G N Q  P+
Sbjct: 97  PHPENSKIVLLMGSNAQNDPS 117


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -3

Query: 496 PAYFCREAVMRFGLKGGAAVVTVLEILELVSQGG 395
           P+ F  E V+   L GG AVV V   LE + Q G
Sbjct: 90  PSSFTGEDVVELQLHGGTAVVDV--TLEAIKQSG 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,926,622
Number of Sequences: 5004
Number of extensions: 61047
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)