Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40284
         (705 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0331 + 28003454-28003912,28004649-28004873,28005017-280053...    29   2.7  
05_03_0625 - 16325827-16326495                                         28   6.3  

>02_05_0331 +
           28003454-28003912,28004649-28004873,28005017-28005370,
           28005673-28005702,28006869-28007342
          Length = 513

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 699 GAFVLSDAPVFEFQAGTNFSNVIHTQQCS 613
           G F++S A  F ++   +F  V+HT++CS
Sbjct: 208 GIFIMSTAVAFCWEISHHFVQVVHTRRCS 236


>05_03_0625 - 16325827-16326495
          Length = 222

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 384 FFRPPP*DTSSKISSTVTTAAPPFKPKRI 470
           FF PPP   + + S+ ++ ++PPF P R+
Sbjct: 18  FFLPPP-PAAPRCSTALSPSSPPFHPTRL 45


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,455,623
Number of Sequences: 37544
Number of extensions: 389945
Number of successful extensions: 725
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)