Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40284
         (705 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27646| Best HMM Match : CbiK (HMM E-Value=2.2)                      29   2.8  
SB_22953| Best HMM Match : EGF_2 (HMM E-Value=1.3e-14)                 28   8.5  

>SB_27646| Best HMM Match : CbiK (HMM E-Value=2.2)
          Length = 423

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 600 WKSIVNIVECVLH*KSWYPPEIRIPVHRSTRMRR 701
           WK+I + VE + + K WYP ++ + + R++   R
Sbjct: 347 WKTINSAVEYISNEKGWYPYDVSMNIIRNSHYTR 380


>SB_22953| Best HMM Match : EGF_2 (HMM E-Value=1.3e-14)
          Length = 635

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -2

Query: 443 SRCNCT*DLRTCISGWGAKKKEQD-DSWVTYDE 348
           SRCN    L  CISGW  K+ E+  DS    DE
Sbjct: 192 SRCNHVTGLCRCISGWTGKRCERPCDSGYYGDE 224


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,541,246
Number of Sequences: 59808
Number of extensions: 445651
Number of successful extensions: 762
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)